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Using molecular dynamics simulations we examine the effective interactions between two like-charged rods as a function of angle and separation. In particular, we determine how the competing electrostatic repulsions and…

Soft Condensed Matter · Physics 2009-11-10 Kun-Chun Lee , Itamar Borukhov , William M. Gelbart , Andrea J. Liu , Mark J. Stevens

Two typical morphology of two-dimensional aggregates are considered: compact crystalline clusters and string-like non-compact conformations. Simulated trajectories of both types of aggregates are analysed with fine spatial resolution. While…

Soft Condensed Matter · Physics 2023-05-23 Tamoghna Das

We systematically investigate the self-assembly of anisotropic cone-shaped particles decorated by ring-like attractive patches. We demonstrate that the self-assembled clusters, which arise due to the conical particle's anisotropic shape…

Materials Science · Physics 2007-05-23 Ting Chen , Zhenli Zhang , Sharon C. Glotzer

Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain…

Cluster growth in a coagulating system of active particles (such as microswimmers in a solvent) is studied by theory and simulation. In contrast to passive systems, the net velocity of a cluster can have various scalings dependent on the…

Soft Condensed Matter · Physics 2014-03-21 P. Cremer , H. Löwen

Dynamical clustering represents a characteristic feature of active matter consisting of self-propelled agents that convert energy from the environment into mechanical motion. At the micron scale, typical of overdamped dynamics, particles…

Soft Condensed Matter · Physics 2024-06-04 Lorenzo Caprini , Davide Breoni , Anton Ldov , Christian Scholz , Hartmut Löwen

Silk cocoons are reconstituted into an aqueous suspension, and protein stability is investigated by comparing the protein's response to hydrochloric acid and sodium chloride. Aggregation occurs at <8 mM hydrochloric acid that is not…

Soft Condensed Matter · Physics 2017-08-16 A. Pasha Tabatabai , Katie M. Weigandt , Daniel L. Blair

Proteinaceous aggregation occurs through self-assembly-- a process not entirely understood. In a recent article [1], an analytical theory for amyloid fibril growth via secondary rather than primary nucleation was presented. Remarkably, with…

Biological Physics · Physics 2010-06-16 Barry D. Ganapol

We study the appearance and properties of cluster crystals (solids in which the unit cell is occupied by a cluster of particles) in a two-dimensional system of self-propelled active Brownian particles with repulsive interactions.…

Statistical Mechanics · Physics 2017-09-06 Jean-Baptiste Delfau , Cristóbal López , Emilio Hernández-García

A stochastic model for the dynamics of enzymatic catalysis in explicit, effective solvents under physiological conditions is presented. Analytically-computed first passage time densities of a diffusing particle in a spherical shell with…

Biomolecules · Quantitative Biology 2015-06-04 Jeremy Schofield , Paul Inder , Raymond Kapral

Ensembles of interacting drops that slide down an inclined plate show a dramatically different coarsening behavior as compared to drops on a horizontal plate: As drops of different size slide at different velocities, frequent collisions…

A phenomenological description for active bundles of polar filaments is presented. The activity of the bundle results from crosslinks, that induce relative displacements between the aligned filaments. Our generic description is based on…

Statistical Mechanics · Physics 2009-11-07 Karsten Kruse , Frank Julicher

Inelastic collisions occur among regolith particles, such as those in the ejecta curtain from a crater, and may cause clustering or agglomeration of particles and thus produce discrete patterns of ejecta deposits around a crater. Previous…

Earth and Planetary Astrophysics · Physics 2018-09-19 Yuuya Nagaashi , Tomomi Omura , Masato Kiuchi , Akiko M. Nakamura , Koji Wada , Sunao Hasegawa

We report surprising steady oscillations in aggregation-fragmentation processes. Oscillating solutions are observed for the class of aggregation kernels $K_{i,j} = i^{\nu}j^{\mu} + j^{\nu}i^{\mu}$ homogeneous in masses $i$ and $j$ of…

Statistical Mechanics · Physics 2023-07-18 N. V. Brilliantov , W. Otieno , S. A. Matveev , A. P. Smirnov , E. E. Tyrtyshnikov , P. L. Krapivsky

We have modeled the layer-by-layer assembly process of flexible polyelectrolytes on flat surfaces. The multilayer has a three-zone structure. An exponential growth is found for the first several layers, followed by a linear growth for…

Soft Condensed Matter · Physics 2007-05-23 Qiang Wang

A microscopic model of adsorption in cluster forming systems with competing interaction is considered. The adsorption process is described by the master equation and modelled by a kinetic Monte Carlo method. The evolution of the particle…

Soft Condensed Matter · Physics 2021-09-07 E. Bildanau , V. Vikhrenko

We show that the kinetics of microribbon formation of amelogenin molecules is well described by a combination of translational and rotational diffusion of a simplified anisotropic bipolar model consisting of hydrophobic spherical colloid…

Soft Condensed Matter · Physics 2011-12-09 Wei Li , Ya Liu , Toni Perez , J. D. Gunton , C. M. Sorensen , A. Chakrabarti

We investigate the aggregation kinetics of sedimenting particles theoretically and numerically, using the advection-diffusion equation. Agglomeration, caused by both transport mechanisms (diffusion and advection), is important for small…

Statistical Mechanics · Physics 2022-11-07 Rishat R. Zagidullin , Alexander P. Smirnov , Sergey A. Matveev , Nikolai V. Brilliantov

Studies in the collective motility of organisms use a range of analytical approaches to formulate continuous kinetic models of collective dynamics from rules or equations describing agent interactions. However, the derivation of these…

We consider a one-dimensional sandpile model which mimics an elastic string of particles driven through a strongly pinning periodic environment with phase disorder. The evolution towards depinning occurs by the triggering of avalanches in…

Statistical Mechanics · Physics 2016-09-30 Melih İşeri , David C. Kaspar , Muhittin Mungan
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