Related papers: Modeling polymerization of microtubules: a quantum…
We consider the existence of a dynamically stable soliton in the one-dimensional cubic-quintic nonlinear Schr\"odinger model with strong cubic nonlinearity management for periodic and random modulations. We show that the predictions of the…
A comprehensive microscopic dynamical theory is presented for the description of quantum fluids as they transform into glasses. The theory is based on a quantum extension of mode-coupling theory. Novel effects are predicted, such as…
The formation and growth of helium bubbles due to self-irradiation in plutonium has been modelled by a discrete kinetic equations for the number densities of bubbles having $k$ atoms. Analysis of these equations shows that the bubble size…
In the past few years, the theory of thermal transport in amorphous solids has been substantially extended beyond the Allen-Feldman model. The resulting formulation, based on the Green-Kubo linear response or the Wigner-transport equation,…
We prove a vanishing property of the normal form transformation of the 1D cubic nonlinear Schr\"odinger (NLS) equation with periodic boundary conditions on $[0,L]$. We apply this property to quintic resonance interactions and obtain a…
We report results of systematic investigation of dynamics featured by moving two-dimensional (2D) solitons generated by the fractional nonlinear Schroedinger equation (FNLSE) with the cubic-quintic nonlinearity. The motion of solitons is a…
We develop a numerical a framework to study phoretic particle dynamics in two dimensions. The particles are modeled as chemically active rigid circles, which can emit or absorb a solute into surrounding fluid. The interaction between…
In this work we study a microtubule (MT) model, whose length is regulated by the action of processive kinesin motors. We treat the case of infinite processivity, i.e. particle exchange in the bulk is neglected. The exact results can be…
Small bubbles in fluids raise to the surface due to Archimede's force. Remarkably, in turbulent flows this process is severely hindered by the presence of vortex filaments, which act as moving potential wells, dynamically trapping light…
We investigate the microtubule polymerization dynamics with catastrophe and rescue events for three different confinement scenarios, which mimic typical cellular environments: (i) The microtubule is confined by rigid and fixed walls, (ii)…
We study numerically the nonlinear stage of modulational instability (MI) of cnoidal waves, in the framework of the focusing one-dimensional Nonlinear Schrodinger (NLS) equation. Cnoidal waves are the exact periodic solutions of the NLS…
A new approach to describe comminution processes in general ball mills as a macroscopic canonical ensemble is proposed. Using hamiltonian method, the model is able to take simultaneously into account the internal dynamics from mechanical…
We present a microscopic approach to quantum dissipation and sketch the derivation of the kinetic equation describing the evolution of a simple quantum system in interaction with a complex quantum system. A typical quantum complex system is…
The Lattice Boltzmann method (LBM) is a well-established mesoscopic approach for simulating fluid dynamics by evolving particle distribution functions on discrete lattices. While the LBM is highly parallelizable on classical hardware, its…
We demonstrate the systematic derivation of a class of discretizations of nonlinear Schr{\"o}dinger (NLS) equations for general polynomial nonlinearity whose stationary solutions can be found from a reduced two-point algebraic condition. We…
We study the elementary characteristics of turbulence in a quantum ferrofluid through the context of a dipolar Bose gas condensing from a highly non-equilibrium thermal state. Our simulations reveal that the dipolar interactions drive the…
It is proposed a dimensional Lattice Boltzmann Method (LBM) of wide application for simulating fluid flow and heat transfer problems. The proposed LBM consists in the numerical solution of the discrete lattice Boltzmann equation (LBE) using…
In this communication the nonlinear wave equations is proposed to describe classical exitations in microtubules. Double-periodic solution of this equation is considered as classical background for quantum excitations.
We use computational modeling to investigate the assembly thermodynamics of a particle-based model for geometrically frustrated assembly, in which the local packing geometry of subunits is incompatible with uniform, strain-free large-scale…
The thermodynamics of vortices in the critically coupled abelian Higgs model, defined on the plane, are investigated by placing $N$ vortices in a region of the plane with periodic boundary conditions: a torus. It is noted that the moduli…