Related papers: Modeling polymerization of microtubules: a quantum…
Starting from the hypothesis that the tubulin dimer is a conformationally bistable molecule - fluctuating between a curved and a straight configuration at room temperature - we develop a model for polymorphic dynamics of the microtubule…
Vortex filament model has become a standard and powerful tool to visualize the motion of quantized vortices in helium superfluids. In this article, we present an overview of the method and highlight its impact in aiding our understanding of…
Quantum computing holds great promise to accelerate scientific computations in fluid dynamics and other classical physical systems. While various quantum algorithms have been proposed for linear flows, developing quantum algorithms for…
Dynamic instability of microtubules is considered using frameworks of non-linear thermodynamics and non-equilibrium reaction-diffusion systems. Stochastic assembly/disassembly phases in the polymerization dynamics of microtubules are…
In this study we formulate a theoretical approach, based on a Boltzmann-like kinetic equation, to describe pattern formation in two-dimensional mixtures of microtubular filaments and molecular motors. Following the previous work by Aranson…
Microtubule dynamics is largely influenced by nucleotide hydrolysis and the resultant tubulin configuration changes. The GTP cap model has been proposed to interpret the stabilizing mechanism of microtubule growth from the view of…
The present article represents part of the PhD. dissertation by C. Josserand. We discuss the nucleation of quantized vortices in the nonlinear Schr\"{o}dinger equation (NLS) for a flow around a disk in two spatial dimensions. It appears…
We present a general formalism able to derive the kinetic equations of polymer dynamics. It is based on the application of nonequilibrium thermodynamics to analyze the irreversible processes taking place in the conformational space of the…
Inspired by patterns observed in mixtures of microtubules and molecular motors, we propose continuum equations for the evolution of motor density, and microtubule orientation. The chief ingredients are the transport of motors along tubules,…
The dynamics of quantized vortices in weakly interacting superfluids are often modeled by a nonlinear Schr\"odinger equation. In contrast, we show that quantized vortices in fact obey a non-Hamiltonian evolution equation, which enhances…
The conventional theory of hydrodynamics describes the evolution in time of chaotic many-particle systems from local to global equilibrium. In a quantum integrable system, local equilibrium is characterized by a local generalized Gibbs…
One-dimensional quantum fluids are conventionally described by using an effective hydrodynamic approach known as Luttinger liquid theory. As the principal simplification, a generic spectrum of the constituent particles is replaced by a…
The study of quantum vortices provides critical insights into non-equilibrium dynamics across diverse physical systems. While previous research has focused on point-like vortices in two dimensions and line-like vortices in three dimensions,…
We propose a two fluid theory to model a dilute polymer solution assuming that it consists of two phases, polymer and solvent, with two distinct macroscopic velocities. The solvent phase velocity is governed by the macroscopic Navier-Stokes…
A simple stochastic model which describes microtubule dynamics and explicitly takes into account the relevant biochemical processes is presented. The model incorporates binding and unbinding of monomers and random phosphate release inside…
We provide the rigorous derivation of the wave kinetic equation from the cubic nonlinear Schr\"odinger (NLS) equation at the kinetic timescale, under a particular scaling law that describes the limiting process. This solves a main…
We consider superfluidity and quantum vorticity in rotating spacetimes. The system is described by a complex scalar satisfying a nonlinear Klein-Gordon equation. Rotation terms are identified and found to lead to the transfer of angular…
We study a spherical, self-gravitating fluid model, which finds applications in cosmic structure formation. We argue that since the system features nonlinearity and gravity-induced dispersion, the emergence of solitons becomes possible. We…
We have developed several distinct model systems of microtubule-based 3D active isotropic fluids and have compared their dynamical and structural properties. The non-equilibrium dynamics of these fluids is powered by three different types…
Using a simple example of biological macromolecules which are partitioned between bulk solution and membrane, we investigate T.L. Hill's phenomenological nanothermodynamics for small systems. By introducing a {\em systems size dependent}…