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Using techniques borrowed from statistical physics and neural networks, we determine the parameters, associated with a scoring function, that are chosen optimally to ensure complete success in threading tests in a training set of proteins.…

Soft Condensed Matter · Physics 2009-11-07 Iksoo Chang , Marek Cieplak , Ruxandra I. Dima , Amos Maritan , Jayanth R. Banavar

In one of the three 2010/2011 issues of the journal 'MathematicalSpectrum', this author gave a three-parameter description of the entire set of integral triangles(i.e. triangles with integer side lengths)and with a 120 degree angle.This…

General Mathematics · Mathematics 2012-03-13 Konstantine Zelator

In this research paper, the problem of optimization of a quadratic form over the convex hull generated by the corners of hypercube is attempted and solved. It is reasoned that under some conditions, the optimum occurs at the corners of…

Numerical Analysis · Computer Science 2014-01-29 Garimella Rama Murthy

Here we give further evidences to support our scaling relation described in our previous paper [cond-mat/0006459, Phys. Rev. Lett. Vol.85, pp.1238 (2000)].

Soft Condensed Matter · Physics 2016-08-16 Chi-Hang Lam , Viktor K. Horváth

We study theoretically the behavior of a class of hydrodynamic dipoles. This study is motivated by recent experiments on synthetic and biological swimmers in microfluidic \textit{Hele-Shaw} type geometries. Under such confinement, a…

Fluid Dynamics · Physics 2015-09-30 Eva Kanso , Alan Tsang

We propose minimal models of one-, two- and three-dimensional micro-swimmers at low Reynolds number with a periodic non-reciprocal motion. These swimmers are either "pushers" or "pullers" of fluid along the swimming axis, or combination of…

Soft Condensed Matter · Physics 2010-04-30 Nobuhiko Watari , Ronald G. Larson

We respond to the recent comment [arXiv:1105.1593] on our Letter [G. G. Plunk and T. Tatsuno, Phys. Rev. Lett. 106, 165003 (2011)]. The comment claims that our argument for spectral transfer direction is incomplete. The comment gives an…

Plasma Physics · Physics 2011-06-07 G. G. Plunk , T. Tatsuno

A recent Letter by Oberlack et al. [Phys. Rev. Lett. 128, 024502 (2022)] claims to have derived new symmetry-induced solutions of the non-modelled statistical Navier-Stokes equations of turbulent channel flow. A high accuracy match to DNS…

Fluid Dynamics · Physics 2023-02-13 Michael Frewer , George Khujadze

We study the dynamics and interaction of two swimming bacteria, modeled by self-propelled dumbbell-type structures. We focus on alignment dynamics of a coplanar pair of elongated swimmers, which propel themselves either by pushing" or…

Analysis of PDEs · Mathematics 2008-11-24 Vitaliy Gyrya , Igor S. Aranson , Leonid V. Berlyand , Dmitry Karpeev

In a recent paper, we have reported a universal power law for both site and bond percolation thresholds for any lattice of cubic symmetry. Extension to anisotropic lattices is discussed.

Disordered Systems and Neural Networks · Physics 2009-10-30 Serge Galam , Alain Mauger

The wavelength of undulatory kinematics of fish is an important parameter to determine their hydrodynamic performance. This study focuses on numerical examination of this feature by reconstructing the real physiological model and kinematics…

Three critical improvements for present day and future retinal vision implants are proposed and discussed: (1) A time profile for the stimulation current that leads predominantly to transverse stimulation of nerve cells; (2) auxiliary…

Neurons and Cognition · Quantitative Biology 2012-10-22 Erich W. Schmid , Wolfgang Fink

We present simulations of a 3-d percolation model studied recently by K.J. Schrenk et al. [Phys. Rev. Lett. 116, 055701 (2016)], obtained with a new and more efficient algorithm. They confirm most of their results in spite of larger systems…

Statistical Mechanics · Physics 2017-03-28 Peter Grassberger

Swimming in circles occurs in a variety of situations at low Reynolds number. Here we propose a simple model for a swimmer that undergoes circular motion, generalising the model of a linear swimmer proposed by Najafi and Golestanian (Phys.…

Soft Condensed Matter · Physics 2012-07-16 Rodrigo Ledesma-Aguilar , Hartmut Loewen , Julia M. Yeomans

I propose a straightforward generalization of the projection scheme for elastic tensors introduced by Moakher and Norris [J. Elasticity 85, 215 (2006)] that takes into account also rotations. The "closest" tensor of any desired symmetry to…

Materials Science · Physics 2014-08-07 Miguel A. Caro

A well studied family of random fractals called fractal percolation is discussed. We focus on the projections of fractal percolation on the plane. Our goal is to present stronger versions of the classical Marstrand theorem, valid for almost…

Dynamical Systems · Mathematics 2013-06-18 Michal Rams , Károly Simon

To evaluate the swimming performances of aquatic animals, an important dimensionless quantity is the Strouhal number, St = fA/U, with f the tail-beat frequency, A the peak-to-peak tail amplitude, and U the swimming velocity. Experiments…

Fluid Dynamics · Physics 2015-03-18 Christophe Eloy

The leading-order parton processes that produce a dilepton with large transverse momentum predict that the transverse polarization should increase with the transverse momentum for almost any choice of the quantization axis for the spin of…

High Energy Physics - Phenomenology · Physics 2009-05-20 Eric Braaten , Daekyoung Kang , Jungil Lee , Chaehyun Yu

We study the corrections to scaling for the mass of the watershed, the bridge line, and the optimal path crack in two and three dimensions. We disclose that these models have numerically equivalent fractal dimensions and leading…

Statistical Mechanics · Physics 2012-07-31 E. Fehr , K. J. Schrenk , N. A. M. Araújo , D. Kadau , P. Grassberger , J. S. Andrade , H. J. Herrmann

The thrust benefits of lateral configurations of two-dimensional undulating fish-like bodies are investigated using high-fidelity numerical simulation. The solution of the Navier--Stokes equations is carried out with a viscous vortex…

Fluid Dynamics · Physics 2010-03-24 Li Jeany Zhang , Jeff D. Eldredge