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A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree based networks. Reticulation-visible networks and child-sibling networks are all…

Populations and Evolution · Quantitative Biology 2015-09-09 Louxin Zhang

The tree spanner problem for a graph $G$ is as follows: For a given integer $k$, is there a spanning tree $T$ of $G$ (called a tree $k$-spanner) such that the distance in $T$ between every pair of vertices is at most $k$ times their…

Combinatorics · Mathematics 2025-02-07 Lan Lin , Yixun Lin

We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…

Data Structures and Algorithms · Computer Science 2024-07-09 Gal Beniamini , Nir Lavee

A tree with at most k leaves is called k-ended tree, and a tree with exactly k leaves is called k-end tree, where a leaf is a vertex of degree one. Contraction of a graph G along the edge e means deleting the edge e and identifying its end…

Combinatorics · Mathematics 2016-12-30 Hamed Ghasemian Zoeram

We introduce some new symmetric tensor categories based on the combinatorics of trees: a discrete family $\mathcal{D}(n)$, for $n \ge 3$ an integer, and a continuous family $\mathcal{C}(t)$, for $t \ne 1$ a complex number. The construction…

Representation Theory · Mathematics 2024-03-19 Nate Harman , Ilia Nekrasov , Andrew Snowden

In this paper, we investigate adaptive nonlinear regression and introduce tree based piecewise linear regression algorithms that are highly efficient and provide significantly improved performance with guaranteed upper bounds in an…

Machine Learning · Computer Science 2013-12-30 N. Denizcan Vanli , Suleyman S. Kozat

We discuss a notion of convergence for binary trees that is based on subtree sizes. In analogy to recent developments in the theory of graphs, posets and permutations we investigate some general aspects of the topology, such as a…

Combinatorics · Mathematics 2024-02-14 Rudolf Grübel

The ternary betweenness relation of a tree, B(x,y,z) expresses that y is on the unique path between x and z. This notion can be extended to order-theoretic trees defined as partial orders such that the set of nodes larger than any node is…

Logic in Computer Science · Computer Science 2023-06-22 Bruno Courcelle

For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…

Combinatorics · Mathematics 2020-06-17 Filippo Disanto , Michael Fuchs , Ariel R. Paningbatan , Noah A. Rosenberg

Phylogenetic networks are a generalisation of phylogenetic trees that allow for more complex evolutionary histories that include hybridisation-like processes. It is of considerable interest whether a network can be considered `tree-like' or…

Populations and Evolution · Quantitative Biology 2017-11-21 Michael Hendriksen

In a graph, a spanning tree is said to be a tree t-spanner of the graph if the distance between any two vertices in is at most times their distance in . The tree t-spanner has many applications in networks and distributed environments. In…

Discrete Mathematics · Computer Science 2014-08-12 Sambhu Charan Barman , Sukumar Mondal , Madhumangal Pal

We compare classes of finite relational structures via monadic second-order transductions. More precisely, we study the preorder where we set C \subseteq K if, and only if, there exists a transduction {\tau} such that C\subseteq{\tau}(K).…

Logic · Mathematics 2015-07-01 Achim Blumensath , Bruno Courcelle

A quasiconformal tree is a doubling (compact) metric tree in which the diameter of each arc is comparable to the distance of its endpoints. We show that for each integer $n\geq 2$, the class of all quasiconformal trees with uniform branch…

Metric Geometry · Mathematics 2024-11-13 Efstathios Konstantinos Chrontsios Garitsis , Fotis Ioannidis , Vyron Vellis

The transmission of a vertex $v$ of a graph $G$ is the sum of distances from $v$ to all the other vertices in $G$. A graph is transmission irregular if all of its vertices have pairwise different transmissions. A starlike tree…

Combinatorics · Mathematics 2020-04-20 Kexiang Xu , Sandi Klavžar

Let $P$ be a set of $n$ points in the plane in general position. We show that at least $\lfloor n/3\rfloor$ plane spanning trees can be packed into the complete geometric graph on $P$. This improves the previous best known lower bound…

Computational Geometry · Computer Science 2019-02-26 Ahmad Biniaz , Alfredo García

A proper vertex of a rooted tree with totally ordered vertices is a vertex that is less than all its proper descendants. We count several kinds of labeled rooted trees and forests by the number of proper vertices. Our results are all…

Combinatorics · Mathematics 2013-04-02 Ira M. Gessel , Seunghyun Seo

We prove that the number of crossings in a random labelled tree with vertices in convex position is asymptotically Gaussian with mean $ n^2/6$ and variance $ n^3/45$. A similar result is proved for points in general position under mild…

Probability · Mathematics 2019-02-15 Octavio Arizmendi , Pilar Cano , Clemens Huemer

The aim of this paper is to provide an affirmative answer to a recent question by Bubeck and Linial on the local profile of trees. For a tree $T$, let $p^{(k)}_1(T)$ be the proportion of paths among all $k$-vertex subtrees (induced…

Combinatorics · Mathematics 2016-02-16 Éva Czabarka , László A. Székely , Stephan Wagner

Given a graph $G$ and a family $\mathcal{G} = \{G_1,\ldots,G_n\}$ of subgraphs of $G$, a transversal of $\mathcal{G}$ is a pair $(T,\phi)$ such that $T \subseteq E(G)$ and $\phi: T \rightarrow [n]$ is a bijection satisfying $e \in…

Combinatorics · Mathematics 2021-04-15 Peter Bradshaw , Kevin Halasz , Ladislav Stacho

We prove that every connected graph with $s$ vertices of degree~1 and 3 and $t$ vertices of degree at least~4 has a spanning tree with at least ${1\over 3}t +{1\over 4}s+{3\over 2}$ leaves. We present infinite series of graphs showing that…

Combinatorics · Mathematics 2014-05-29 Dmitri Karpov