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Background. Dynamical models of gene regulatory networks (GRNs) are highly effective in describing complex biological phenomena and processes, such as cell differentiation and cancer development. Yet, the topological and functional…

Molecular Networks · Quantitative Biology 2015-08-17 Andrea Paroni , Alex Graudenzi , Giulio Caravagna , Chiara Damiani , Giancarlo Mauri , Marco Antoniotti

As large language models (LLMs) advance, their ability to perform in-context learning and few-shot language generation has improved significantly. This has spurred using LLMs to produce high-quality synthetic data to enhance the performance…

Computation and Language · Computer Science 2025-02-18 Jiyuan Ren , Zhaocheng Du , Zhihao Wen , Qinglin Jia , Sunhao Dai , Chuhan Wu , Zhenhua Dong

Programmatically generated synthetic data has been used in differential private training for classification to enhance performance without privacy leakage. However, as the synthetic data is generated from a random process, the distribution…

Machine Learning · Computer Science 2024-12-16 Yujin Choi , Jinseong Park , Junyoung Byun , Jaewook Lee

In this paper, a method is presented to synthesize neural network controllers such that the feedback system of plant and controller is dissipative, certifying performance requirements such as L2 gain bounds. The class of plants considered…

Systems and Control · Electrical Eng. & Systems 2024-04-12 Neelay Junnarkar , Murat Arcak , Peter Seiler

Data plays a fundamental role in consolidating markets, services, and products in the digital financial ecosystem. However, the use of real data, especially in the financial context, can lead to privacy risks and access restrictions,…

In confirmatory clinical trials, it has been proposed to use a simple iterative graphical approach to construct and perform intersection hypotheses tests with a weighted Bonferroni-type procedure to control type I errors in the strong…

Methodology · Statistics 2022-08-03 Tianyu Zhan , Alan H Hartford , Jian Kang , Walter W Offen

Understanding the complex and stochastic nature of Gene Regulatory Networks (GRNs) remains a central challenge in systems biology. Existing modeling paradigms often struggle to effectively capture the intricate, multi-factor regulatory…

Molecular Networks · Quantitative Biology 2025-08-20 Yiyang Jia , Zheng Wei , Zheng Yang , Guohong Peng

Software implementations of controllers for physical systems are at the core of many embedded systems. The design of controllers uses the theory of dynamical systems to construct a mathematical control law that ensures that the controlled…

Systems and Control · Computer Science 2012-04-16 Rupak Majumdar , Indranil Saha , Majid Zamani

Modulation classification, an intermediate process between signal detection and demodulation in a physical layer, is now attracting more interest to the cognitive radio field, wherein the performance is powered by artificial intelligence…

Signal Processing · Electrical Eng. & Systems 2020-09-07 Thien Huynh-The , Van-Sang Doan , Cam-Hao Hua , Quoc-Viet Pham , Dong-Seong Kim

The deployment of neural networks on heterogeneous SoCs coupled with custom accelerators is a challenging task because of the lack of end-to-end software tools provided for these systems. Moreover, the already available low level schedules…

Machine Learning · Computer Science 2024-06-11 F. N. Peccia , O. Bringmann

Biological sequence analysis is an essential step toward building a deeper understanding of the underlying functions, structures, and behaviors of the sequences. It can help in identifying the characteristics of the associated organisms,…

Machine Learning · Computer Science 2023-03-07 Taslim Murad , Sarwan Ali , Murray Patterson

Recent advances in large language model (LLM) training have highlighted the need for diverse, high-quality instruction data. Recently, many works are exploring synthetic data generation using LLMs. However, they primarily focus on prompt…

Computation and Language · Computer Science 2024-12-10 Yifang Chen , David Zhu , Simon Du , Kevin Jamieson , Yang Liu

Despite the success of deep neural networks (DNNs) in image classification tasks, the human-level performance relies on massive training data with high-quality manual annotations, which are expensive and time-consuming to collect. There…

Machine Learning · Computer Science 2019-04-15 Junnan Li , Yongkang Wong , Qi Zhao , Mohan Kankanhalli

An input to a system reveals a non-robust behaviour when, by making a small change in the input, the output of the system changes from acceptable (passing) to unacceptable (failing) or vice versa. Identifying inputs that lead to non-robust…

Software Engineering · Computer Science 2023-01-24 Baharin Aliashrafi Jodat , Shiva Nejati , Mehrdad Sabetzadeh , Patricio Saavedra

Motivation: Predictive modelling of gene expression is a powerful framework for the in silico exploration of transcriptional regulatory interactions through the integration of high-throughput -omics data. A major limitation of previous…

Genomics · Quantitative Biology 2018-08-14 David M Budden , Daniel G Hurley , Edmund J Crampin

We present a data-driven approach to the quantitative verification of probabilistic programs and stochastic dynamical models. Our approach leverages neural networks to compute tight and sound bounds for the probability that a stochastic…

Logic in Computer Science · Computer Science 2026-04-22 Alessandro Abate , Alec Edwards , Mirco Giacobbe , Hashan Punchihewa , Diptarko Roy

Network embedding aims to find a way to encode network by learning an embedding vector for each node in the network. The network often has property information which is highly informative with respect to the node's position and role in the…

Social and Information Networks · Computer Science 2018-11-28 Enya Shen , Zhidong Cao , Changqing Zou , Jianmin Wang

Many machine learning models perform well when making predictions within the training data range, but often struggle when required to extrapolate beyond it. Symbolic regression (SR) using genetic programming (GP) can generate flexible…

Machine Learning · Computer Science 2025-12-01 Fitria Wulandari Ramlan , Colm O'Riordan , Gabriel Kronberger , James McDermott

Neural Module Networks (NMNs) have been quite successful in incorporating explicit reasoning as learnable modules in various question answering tasks, including the most generic form of numerical reasoning over text in Machine Reading…

Computation and Language · Computer Science 2021-01-29 Amrita Saha , Shafiq Joty , Steven C. H. Hoi

Reinforcement learning algorithms need exploration to learn. However, unsupervised exploration prevents the deployment of such algorithms on safety-critical tasks and limits real-world deployment. In this paper, we propose a new algorithm…

Machine Learning · Computer Science 2024-02-07 Sven Gronauer , Tom Haider , Felippe Schmoeller da Roza , Klaus Diepold
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