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Random geometric graphs are random graph models defined on metric measure spaces. A random geometric graph is generated by first sampling points from a metric space and then connecting each pair of sampled points independently with a…

Probability · Mathematics 2025-11-10 Han Huang , Pakawut Jiradilok , Elchanan Mossel

In the Graph Reconstruction (GR) problem, the goal is to recover a hidden graph by utilizing some oracle that provides limited access to the structure of the graph. The interest is in characterizing how strong different oracles are when the…

Data Structures and Algorithms · Computer Science 2025-09-15 Juha Harviainen , Pekka Parviainen

Markov chains are convenient means of generating realizations of networks with a given (joint or otherwise) degree distribution, since they simply require a procedure for rewiring edges. The major challenge is to find the right number of…

Social and Information Networks · Computer Science 2012-11-01 J. Ray , A. Pinar , C. Seshadhri

The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree…

Populations and Evolution · Quantitative Biology 2013-10-15 Benny Chor , Mike Steel

Identifying the sets of operations that can be executed simultaneously is an important problem appearing in many parallel applications. By modeling the operations and their interactions as a graph, one can identify the independent…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-07-28 Ahmet Erdem Sarıyüce , Erik Saule , Ümit V. Çatalyürek

There has been an increased interest in applying machine learning techniques on relational structured-data based on an observed graph. Often, this graph is not fully representative of the true relationship amongst nodes. In these settings,…

Machine Learning · Statistics 2022-08-05 Florence Regol , Soumyasundar Pal , Jianing Sun , Yingxue Zhang , Yanhui Geng , Mark Coates

We study the probabilistic convergence between the mapper graph and the Reeb graph of a topological space $\mathbb{X}$ equipped with a continuous function $f: \mathbb{X} \rightarrow \mathbb{R}$. We first give a categorification of the…

Algebraic Topology · Mathematics 2020-08-17 Adam Brown , Omer Bobrowski , Elizabeth Munch , Bei Wang

In this note, we investigate fundamental relations between exploration processes in random graphs, and branching processes. We formulate a class of models that we call {\em rank-$k$ random graphs}, and that are special in that their…

Probability · Mathematics 2022-07-26 Suman Chakraborty , Kjell Raaijmakers , Remco van der Hofstad

We consider a pruning of the inhomogeneous continuum random trees, as well as the cut trees that encode the genealogies of the fragmentations that come with the pruning. We propose a new approach to the reconstruction problem, which has…

Probability · Mathematics 2023-02-03 Nicolas Broutin , Hui He , Minmin Wang

Sampling random graphs is essential in many applications, and often algorithms use Markov chain Monte Carlo methods to sample uniformly from the space of graphs. However, often there is a need to sample graphs with some property that we are…

Social and Information Networks · Computer Science 2018-10-29 Caitlin Gray , Lewis Mitchell , Matthew Roughan

One of the most influential recent results in network analysis is that many natural networks exhibit a power-law or log-normal degree distribution. This has inspired numerous generative models that match this property. However, more recent…

Data Structures and Algorithms · Computer Science 2011-09-01 Isabelle Stanton , Ali Pinar

We introduce a model for a growing random graph based on simultaneous reproduction of the vertices. The model can be thought of as a generalisation of the reproducing graphs of Southwell and Cannings and Bonato et al to allow for a random…

Probability · Mathematics 2011-04-20 Jonathan Jordan

We study various classes of random processes defined on the regular tree $T_d$ that are invariant under the automorphism group of $T_d$. Most important ones are factor of i.i.d. processes (randomized local algorithms), branching Markov…

Probability · Mathematics 2015-07-28 Ágnes Backhausz , Balázs Szegedy

We present an algorithm for the optimization and thermal equilibration of spin glasses - or more generally, cost functions of the Ising form $H=\sum_{\langle i j\rangle} J_{ij} s_i s_j + \sum_i h_i s_i$, defined on graphs with arbitrary…

Statistical Mechanics · Physics 2017-08-11 Itay Hen

We prove several results about the complexity of the role colouring problem. A role colouring of a graph $G$ is an assignment of colours to the vertices of $G$ such that two vertices of the same colour have identical sets of colours in…

Data Structures and Algorithms · Computer Science 2014-08-26 Christopher Purcell , M. Puck Rombach

We present a graph neural network model for solving graph-to-graph learning problems. Most deep learning on graphs considers ``simple'' problems such as graph classification or regressing real-valued graph properties. For such tasks, the…

Machine Learning · Computer Science 2021-06-08 Guan Wang , Francois Bernard Lauze , Aasa Feragen

In the past two decades, significant advances have been made in understanding the structural and functional properties of biological networks, via graph-theoretic analysis. In general, most graph-theoretic studies are conducted in the…

Physics and Society · Physics 2013-10-21 Michelle Rudolph-Lilith , Lyle E. Muller

We work out the theory of fractional isomorphism of graphons as a generalization to the classical theory of fractional isomorphism of finite graphs. The generalization is given in terms of homomorphism densities of finite trees and it is…

Combinatorics · Mathematics 2021-02-05 Jan Grebík , Israel Rocha

A key insight from statistical physics about spin systems on random graphs is the central role played by Gibbs measures on trees. We determine the local weak limit of the hardcore model on random regular graphs asymptotically until just…

Probability · Mathematics 2014-05-26 Nayantara Bhatnagar , Allan Sly , Prasad Tetali

In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a properly colored spanning tree, i.e., a spanning tree in which any two adjacent edges have distinct colors. The problem…

Data Structures and Algorithms · Computer Science 2024-02-02 Yuhang Bai , Kristóf Bérczi , Gergely Csáji , Tamás Schwarcz