Related papers: A tree without leaves
A linear forest is a collection of vertex-disjoint paths. The Linear Arboricity Conjecture states that every graph of maximum degree $\Delta$ can be decomposed into at most $\lceil(\Delta+1)/2\rceil$ linear forests. We prove that $\Delta/2…
A tree is scattered if no subdivision of the complete binary tree is a subtree. Building on results of Halin, Polat and Sabidussi, we identify four types of subtrees of a scattered tree and a function of the tree into the integers at least…
Suppose $G$ is a tree. Graham's "Tree Reconstruction Conjecture" states that $G$ is uniquely determined by the integer sequence $|G|$, $|L(G)|$, $|L(L(G))|$, $|L(L(L(G)))|$, $\ldots$, where $L(H)$ denotes the line graph of the graph $H$.…
Given an edge-weighted tree $T$ with $n$ leaves, sample the leaves uniformly at random without replacement and let $W_k$, $2 \le k \le n$, be the length of the subtree spanned by the first $k$ leaves. We consider the question, "Can $T$ be…
We explore new connections between complete non-ambiguous trees (CNATs) and permutations. We give a bijection between tree-like tableaux and a specific subset of CNATs. This map is used to establish and solve a recurrence relation for the…
We consider drawings of trees in which all edges incident to leaves can be extended to infinite rays without crossing, partitioning the plane into infinite convex polygons. Among all such drawings we seek the one maximizing the angular…
The structure of an evolving network contains information about its past. Extracting this information efficiently, however, is, in general, a difficult challenge. We formulate a fast and efficient method to estimate the most likely history…
We prove a fix point theorem for monoids of self-embeddings of trees. As a corollary, we obtain a result by Laflamme, Pouzet and Sauer that a tree either contains a subdivided binary tree as a subtree or has a vertex, and edge, an end or…
We construct a new bijection between the set of $n\times k$ $0$-$1$ matrices with no three $1$'s forming a $\Gamma$ configuration and the set of $(n,k)$-Callan sequences, a simple structure counted by poly-Bernoulli numbers. We give two…
By combining theoretical and computational techniques from geometry, calculus, group theory, and Galois theory, we prove the nonexistence of a closed-form algebraic solution to a Japanese geometry problem first stated in the early…
Reverse search is a convenient method for enumerating structured objects, that can be used both to address theoretical issues and to solve data mining problems. This method has already been successfully developed to handle unordered trees.…
Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…
This is a new and short proof of the main theorem of classical structure tree theory. Namely, we show the existence of certain automorphism-invariant tree-decompositions of graphs based on the principle of removing finitely many edges. This…
A phylogenetic tree is a graphical representation of an evolutionary history of taxa in which the leaves correspond to the taxa and the non-leaves correspond to speciations. One of important problems in phylogenetic analysis is to assemble…
We investigate a neutral model for speciation and extinction, the constant rate birth-death process. The process is conditioned to have $n$ extant species today, we look at the tree distribution of the reconstructed trees-- i.e. the trees…
We define the generalized Golomb triangular recursion by g_{j,s,lambda}(n) = g_{j,s,lambda}(n - s - g_{j,s,lambda}(n-j)) + \lambda j. For particular choices of the initial conditions, we show that the solution of the recursion is a non-slow…
There are various reasons why adding stubs to the vertices of open string field theory (OSFT) is interesting: Not only the stubs can tame certain singularities and make the theory more well-behaved, but also the new theory shares a lot of…
Working with tree graphs is always easier than with loopy ones and spanning trees are the closest tree-like structures to a given graph. We find a correspondence between the solutions of random K-satisfiability problem and those of spanning…
For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model predicts, it must be possible to recover the tree parameter.…
A phylogenetic tree is a tree with a fixed set of leaves that has no vertices of degree two. In this paper, we axiomatically define four other discrete structures on the set of leaves. We prove that each of these structures is an equivalent…