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On the basis of a previous theoretical approach to the plastic flow of highly refined materials, a physical explanation for diffusion bonding is essayed, which yields closed--form equations relating the bonding progress with time,…

Materials Science · Physics 2010-07-02 Miguel Lagos , César Retamal

The bulk-surface wave pinning model is a reaction-diffusion system for studying cell polarisation. It is constituted by a surface reaction-diffusion equation, coupled to a bulk diffusion equation with a non-linear boundary condition. Cell…

Biological Physics · Physics 2022-11-01 Davide Cusseddu , Anotida Madzvamuse

In weakly bound diatomic molecules, energy levels are closely spaced and thus more susceptible to mixing by magnetic fields than in the constituent atoms. We use this effect to control the strengths of forbidden optical transitions in…

Atomic Physics · Physics 2015-12-22 B. H. McGuyer , M. McDonald , G. Z. Iwata , W. Skomorowski , R. Moszynski , T. Zelevinsky

We study far from equilibrium transport of a periodically driven inertial Brownian particle moving in a periodic potential. As detected recently for a SQUID ratchet dynamics (Spiechowicz J. & Luczka J. Phys. Rev. E 91, 062104 (2015)), the…

Statistical Mechanics · Physics 2016-12-07 Jakub Spiechowicz , Peter Hänggi , Jerzy Łuczka

In many applications, transport of particles can be described by the diffusion equation, or its convective-diffusion generalizations, in part of three-dimensional space. In particular, in surface deposition or in growth of aggregates or…

Condensed Matter · Physics 2016-07-12 Vladimir Privman , Jongsoon Park

We consider a nonlinear reaction--diffusion equation in a domain consisting of two bulk regions connected via small channels periodically distributed within a thin layer. The height and the thickness of the channels are of order $\epsilon$,…

Analysis of PDEs · Mathematics 2021-12-02 Markus Gahn , Maria Neuss-Radu

In bacteria, regulatory proteins search for a specific DNA binding target via "facilitated diffusion": a series of rounds of 3D diffusion in the cytoplasm, and 1D linear diffusion along the DNA contour. Using large scale Brownian dynamics…

Biological Physics · Physics 2013-09-05 C. A. Brackley , M. E. Cates , D. Marenduzzo

Macromolecular crowding affects biophysical processes as diverse as diffusion, gene expression, cell growth, and senescence. Yet, there is no comprehensive understanding of how crowding affects reactions, particularly multivalent binding.…

Soft Condensed Matter · Physics 2024-01-15 Tomasz Skóra , Mathijs Janssen , Andreas Carlson , Svyatoslav Kondrat

Inverse power law distributions are generally interpreted as a manifestation of complexity, and waiting time distributions with power index \mu < 2 reflect the occurrence of ergodicity breaking renewal events. In this Letter we show how to…

Adaptation and Self-Organizing Systems · Physics 2015-06-11 Marzieh Zare , Paolo Grigolini

We define a notion of coupling time with ambiguities for interacting particle systems, and show how this can be used to prove ergodicity and to bound the convergence time to equilibrium and the decay of correlations at equilibrium. A…

Probability · Mathematics 2007-12-04 Jean Bérard , Didier Piau

We consider a class of Cahn-Hilliard equation that characterizes phase separation phenomena of binary mixtures in a bounded domain $\Omega \subset \mathbb{R}^d$ $(d\in \{2,3\})$ with non-permeable boundary. The equations in the bulk are…

Analysis of PDEs · Mathematics 2024-06-03 Maoyin Lv , Hao Wu

Experiments have shown that self-propelled particles can slide along the surface of a circular obstacle without becoming trapped over long times. Using simulations and theory, we study the impact of boundary conditions on the diffusive…

Biological Physics · Physics 2019-01-30 Theresa Jakuszeit , Ottavio A. Croze , Samuel Bell

We study noisy heterogeneous diffusion processes with a position dependent diffusivity of the form $D(x)\sim D_0|x|^\alpha$ in the presence of annealed and quenched disorder of the environment, corresponding to an effective variation of the…

Statistical Mechanics · Physics 2015-06-23 Andrey G. Cherstvy , Ralf Metzler

The dynamics of particles interacting by key-lock binding of attached biomolecules are studied theoretically. Experimental realizations of such systems include colloids grafted with complementary single-stranded DNA (ssDNA), and particles…

Soft Condensed Matter · Physics 2009-11-13 Nicholas A. Licata , Alexei V. Tkachenko

A global existence theorem on weak solutions is shown for the continuous coagulation equation with collisional breakage under certain classes of unbounded collision kernels and distribution functions. This model describes the dynamics of…

Analysis of PDEs · Mathematics 2018-05-28 Prasanta Kumar Barik , Ankik Kumar Giri

Reactivity boundaries that divide the origin and destination of trajectories are crucial of importance to reveal the mechanism of reactions, which was recently found to exist robustly even at high energies for index-one saddles [Phys. Rev.…

Chemical Physics · Physics 2013-11-13 Yutaka Nagahata , Hiroshi Teramoto , Chun-Biu Li , Shinnosuke Kawai , Tamiki Komatsuzaki

We find a general formula for the distribution of time averaged observables for weakly non-ergodic systems. Such type of ergodicity breaking is known to describe certain systems which exhibit anomalous fluctuations, e.g. blinking quantum…

Statistical Mechanics · Physics 2009-11-13 Adi Rebenshtok , Eli Barkai

Diffusion in the crowded environments of the biological membranes or materials interfaces often involves intermittent binding to surface proteins or defects. To account for this situation we study a 2-dimensional lattice gas in a field of…

Soft Condensed Matter · Physics 2021-06-25 Mislav Cvitković , Dipanwita Ghanti , Niklas Raake , Ana-Sunčana Smith

We discuss the diffusion phenomenon in the parabolic and hyperbolic regimes. New effects related to the finite velocity of the diffusion process are predicted, that can partially explain the strange behavior associated to adsorption…

Mathematical Physics · Physics 2014-02-13 A. Sapora , M. Codegone , G. Barbero

Biomolecular condensates are essential for cellular organization and result from phase separation in systems far from thermodynamic equilibrium. Among various models, chemically active droplets play a significant role, consisting of…

Soft Condensed Matter · Physics 2025-05-19 Jacques Fries , Roxanne Berthin , Chengjie Luo , Marie Jardat , David Zwicker , Vincent Dahirel , Pierre Illien