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A transfer-matrix formalism is introduced to evaluate exactly the partition function of the Munoz-Eaton model, relating the folding kinetics of proteins of known structure to their thermodynamics and topology. This technique can be used for…

Statistical Mechanics · Physics 2009-11-07 Pierpaolo Bruscolini , Alessandro Pelizzola

We discuss realization, properties and performance of the adaptive finite element approach to the design of nano-photonic components. Central issues are the construction of vectorial finite elements and the embedding of bounded components…

Optics · Physics 2015-05-13 Jan Pomplun , Sven Burger , Lin Zschiedrich , Frank Schmidt

Computational modelling offers a cost-effective and time-efficient alternative to experimental studies in biomedical engineering. In cardiac electro-mechanics, finite element method (FEM)-based simulations provide valuable insights into…

Computational Engineering, Finance, and Science · Computer Science 2025-08-20 Tan Tran , Denisa Martonova , Sigrid Leyendecker

The structure and function of biological molecules are strongly influenced by the water and dissolved ions that surround them. This aqueous solution (solvent) exerts significant electrostatic forces in response to the biomolecule's…

Numerical Analysis · Mathematics 2015-12-29 Matthew G. Knepley , Jaydeep P. Bardhan

This paper proposes a finite element method that couples mixed and Lagrange finite elements to efficiently capture stress concentrations in elasticity problems. The method employs conforming mixed finite elements in regions with stress…

Numerical Analysis · Mathematics 2026-04-21 Wei Chen , Jun Hu , Limin Ma , Mingyan Zhang

We present the Neural Approximated Virtual Element Method to numerically solve elasticity problems. This hybrid technique combines classical concepts from the Finite Element Method and the Virtual Element Method with recent advances in deep…

Numerical Analysis · Mathematics 2025-07-09 Stefano Berrone , Moreno Pintore , Gioana Teora

The Intrinsic Surface Finite Element Method (ISFEM) was recently proposed to solve Partial Differential Equations (PDEs) on surfaces. ISFEM proceeds by writing the PDE with respect to a local coordinate system anchored to the surface and…

Numerical Analysis · Mathematics 2024-10-08 Elena Bachini , Mario Putti

A dynamic linear thermo-poroelasticity model, containing inertial and relaxation terms with second-order time derivatives, is investigated in this paper. The mathematical and numerical analysis of this model is performed in the frequency…

Numerical Analysis · Mathematics 2025-11-25 Hongpeng Li , Cristian Carcamo , Hongxing Rui , Volker John

Laminated glass units exhibit complex response as a result of different mechanical behavior and properties of glass and polymer foil. We aim to develop a finite element model for elastic laminated glass plates based on the refined plate…

Computational Engineering, Finance, and Science · Computer Science 2016-08-10 Alena Zemanová , Jan Zeman , Michal Šejnoha

We propose a parametric finite element method (PFEM) for efficiently solving the morphological evolution of solid-state dewetting of thin films on a flat rigid substrate in three dimensions (3D). The interface evolution of the dewetting…

Computational Physics · Physics 2020-03-03 Quan Zhao , Wei Jiang , Weizhu Bao

We analyse wave propagation in two-dimensional bianisotropic media with the Finite Element Method (FEM). We start from the Maxwell-Tellegen's equations in bianisotropic media, and derive some system of coupled Partial Difference Equations…

Optics · Physics 2016-12-21 Yan Liu , Boris Gralak , Sebastien Guenneau

We have applied the Finite Element Method to the self-consistent electronic structure calculations of molecules and solids for the first time. In this approach all the calculations are performed in "real space" and the use of non-uniform…

mtrl-th · Physics 2009-10-28 Eiji Tsuchida , Masaru Tsukada

We consider a sharp interface formulation for an anisotropic multi-phase Mullins-Sekerka problem with kinetic undercooling. The flow is characterized by a cluster of surfaces evolving such that the total surface energy plus a weighted sum…

Numerical Analysis · Mathematics 2026-02-23 Tokuhiro Eto , Harald Garcke , Robert Nürnberg

The finite element method (FEM) is a cornerstone numerical technique for solving partial differential equations (PDEs). Here, we present $\textbf{Qu-FEM}$, a fault-tolerant era quantum algorithm for the finite element method. In contrast to…

Quantum Physics · Physics 2025-10-22 Ahmad M. Alkadri , Tyler D. Kharazi , K. Birgitta Whaley , Kranthi K. Mandadapu

We develop a cut finite element method for the Darcy problem on surfaces. The cut finite element method is based on embedding the surface in a three dimensional finite element mesh and using finite element spaces defined on the three…

Numerical Analysis · Mathematics 2017-10-11 Peter Hansbo , Mats G. Larson , Andre Massing

In this work we present a novel monolithic Finite Element Method (FEM) for the hydroelastic analysis of Very Large Floating Structures (VLFS) with arbitrary shapes that is stable, energy conserving and overcomes the need of an iterative…

Computational Engineering, Finance, and Science · Computer Science 2022-06-28 Oriol Colomés , Francesc Verdugo , Ido Akkerman

A finite element methodology for large classes of variational boundary value problems is defined which involves discretizing two linear operators: (1) the differential operator defining the spatial boundary value problem; and (2) a Riesz…

Numerical Analysis · Mathematics 2017-12-08 Brendan Keith , Socratis Petrides , Federico Fuentes , Leszek Demkowicz

We present the analytical formulation and the finite element solution of a fractional-order nonlocal continuum model of a Euler-Bernoulli beam. Employing consistent definitions for the fractional-order kinematic relations, the governing…

Numerical Analysis · Mathematics 2021-02-11 Sansit Patnaik , Sai Sidhardh , Fabio Semperlotti

Fourier solvers have become efficient tools to establish structure-property relations in heterogeneous materials. Introduced as an alternative to the Finite Element (FE) method, they are based on fixed-point solutions of the…

Computational Physics · Physics 2017-09-01 Jan Zeman , Tom W. J. de Geus , Jaroslav Vondřejc , Ron H. J. Peerlings , Marc G. D. Geers

An important step in shape optimization with partial differential equation constraints is to adapt the geometry during each optimization iteration. Common strategies are to employ mesh-deformation or re-meshing, where one or the other…

Numerical Analysis · Mathematics 2018-06-27 Jorgen S. Dokken , Simon W. Funke , August Johansson , Stephan Schmidt
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