Topologically Invariant Permutation Test

Functional brain networks exhibit topological structures that reflect neural organization; however, statistical comparison of these networks is challenging for several reasons. This paper introduces a topologically invariant permutation test for detecting topological inequivalence. Under topological equivalence, topological features can be permuted separately between groups without distorting individual network structures. The test statistic uses $2$-Wasserstein distances on persistent diagrams, computed in closed form. To reduce variability in brain connectivities while preserving topology, heat kernel expansion on the Hodge Laplacian is applied with bandwidth $t$ controlling diffusion intensity. Theoretical results guarantee variance reduction through optimal Hilbert space projection. Simulations across diverse network topologies show superior performance compared to conventional two-sample tests and alternative metrics. Applied to resting-state fMRI data from the Multimodal Treatment of ADHD study, the method detects significant topological differences between cannabis users and non-users.