English

Thermodynamic stability of small-world oscillator networks: A case study of proteins

Biological Physics 2009-05-28 v1 Soft Condensed Matter Biomolecules

Abstract

We study vibrational thermodynamic stability of small-world oscillator networks, by relating the average mean-square displacement SS of oscillators to the eigenvalue spectrum of the Laplacian matrix of networks. We show that the cross-links suppress SS effectively and there exist two phases on the small-world networks: 1) an unstable phase: when p1/Np\ll1/N, SNS\sim N; 2) a stable phase: when p1/Np\gg1/N, Sp1S\sim p^{-1}, \emph{i.e.}, S/NEcr1S/N\sim E_{cr}^{-1}. Here, pp is the parameter of small-world, NN is the number of oscillators, and Ecr=pNE_{cr}=pN is the number of cross-links. The results are exemplified by various real protein structures that follow the same scaling behavior S/NEcr1S/N\sim E_{cr}^{-1} of the stable phase. We also show that it is the "small-world" property that plays the key role in the thermodynamic stability and is responsible for the universal scaling S/NEcr1S/N\sim E_{cr}^{-1}, regardless of the model details.

Keywords

Cite

@article{arxiv.0905.1062,
  title  = {Thermodynamic stability of small-world oscillator networks: A case study of proteins},
  author = {Jie Ren and Baowen Li},
  journal= {arXiv preprint arXiv:0905.1062},
  year   = {2009}
}

Comments

7 pages, 5 figures, accepted by Physical Review E