English

Space-time Trade-offs for the LCP Array of Wheeler DFAs

Data Structures and Algorithms 2024-08-20 v2

Abstract

Recently, Conte et al. generalized the longest-common prefix (LCP) array from strings to Wheeler DFAs, and they showed that it can be used to efficiently determine matching statistics on a Wheeler DFA [DCC 2023]. However, storing the LCP array requires O(nlogn) O(n \log n) bits, n n being the number of states, while the compact representation of Wheeler DFAs often requires much less space. In particular, the BOSS representation of a de Bruijn graph only requires a linear number of bits, if the size of alphabet is constant. In this paper, we propose a sampling technique that allows to access an entry of the LCP array in logarithmic time by only storing a linear number of bits. We use our technique to provide a space-time trade-off to compute matching statistics on a Wheeler DFA. In addition, we show that by augmenting the BOSS representation of a k k -th order de Bruijn graph with a linear number of bits we can navigate the underlying variable-order de Bruijn graph in time logarithmic in k k , thus improving a previous bound by Boucher et al. which was linear in k k [DCC 2015].

Keywords

Cite

@article{arxiv.2306.05684,
  title  = {Space-time Trade-offs for the LCP Array of Wheeler DFAs},
  author = {Nicola Cotumaccio and Travis Gagie and Dominik Köppl and Nicola Prezza},
  journal= {arXiv preprint arXiv:2306.05684},
  year   = {2024}
}