English

Scaling limit of the disordered generalized Poland--Scheraga model for DNA denaturation

Probability 2024-06-18 v2 Mathematical Physics math.MP

Abstract

The Poland--Scheraga model, introduced in the 1970's, is a reference model to describe the denaturation transition of DNA. More recently, it has been generalized in order to allow for asymmetry in the strands lengths and in the formation of loops: the mathematical representation is based on a bivariate renewal process, that describes the pairs of bases that bond together. In this paper, we consider a disordered version of the model, in which the two strands interact via a potential βV(ω^i,ωˉj)+h\beta V(\hat\omega_i,\bar\omega_j)+h when the ii-th monomer of the first strand and the jj-th monomer of the second strand meet. Here, hRh\in\mathbb R is a homogeneous pinning parameter, (ω^i)i1(\hat\omega_i)_{i\geq 1} and (ωˉj)j1(\bar\omega_j)_{j\geq 1} are two sequences of i.i.d.~random variables attached to each DNA strand, V(,)V(\cdot,\cdot) is an interaction function and β>0\beta>0 is the disorder intensity. Our main result finds some condition on the underlying bivariate renewal so that, if one takes β,h0\beta,h\downarrow0 at some appropriate (explicit) rate as the length of the strands go to infinity, the partition function of the model admits a non-trivial, i.e. disordered, scaling limit. This is known as an \textit{intermediate disorder} regime and is linked to the question of disorder relevance for the denaturation transition. Interestingly and surprisingly, the rate at which one has to take β0\beta\downarrow0 depends on the interaction function V(,)V(\cdot,\cdot) and on the distribution of (ω^i)i1(\hat\omega_i)_{i\geq 1}, (ωˉj)j1(\bar\omega_j)_{j\geq 1}. On the other hand, the intermediate disorder limit of the partition function, when it exists, is universal: it is expressed as a chaos expansion of iterated integrals against a Gaussian process~M\mathcal{M}, which arises as the scaling limit of the field (eβV(ω^i,ωˉj))i,j0(e^{\beta V(\hat\omega_i,\bar\omega_j)})_{i,j\geq 0} and exhibits strong correlations on lines and columns.

Keywords

Cite

@article{arxiv.2209.13480,
  title  = {Scaling limit of the disordered generalized Poland--Scheraga model for DNA denaturation},
  author = {Quentin Berger and Alexandre Legrand},
  journal= {arXiv preprint arXiv:2209.13480},
  year   = {2024}
}

Comments

60 pages, 7 figures