Relaxation time of $L$-reversal chains and other chromosome shuffles
Abstract
We prove tight bounds on the relaxation time of the so-called -reversal chain, which was introduced by R. Durrett as a stochastic model for the evolution of chromosome chains. The process is described as follows. We have distinct letters on the vertices of the -cycle ( mod ); at each step, a connected subset of the graph is chosen uniformly at random among all those of length at most , and the current permutation is shuffled by reversing the order of the letters over that subset. We show that the relaxation time , defined as the inverse of the spectral gap of the associated Markov generator, satisfies . Our results can be interpreted as strong evidence for a conjecture of R. Durrett predicting a similar behavior for the mixing time of the chain.
Cite
@article{arxiv.math/0412449,
title = {Relaxation time of $L$-reversal chains and other chromosome shuffles},
author = {N. Cancrini and P. Caputo and F. Martinelli},
journal= {arXiv preprint arXiv:math/0412449},
year = {2007}
}
Comments
Published at http://dx.doi.org/10.1214/105051606000000295 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org)