English

Relaxation time of $L$-reversal chains and other chromosome shuffles

Probability 2007-05-23 v2

Abstract

We prove tight bounds on the relaxation time of the so-called LL-reversal chain, which was introduced by R. Durrett as a stochastic model for the evolution of chromosome chains. The process is described as follows. We have nn distinct letters on the vertices of the n{n}-cycle (Z{{\mathbb{Z}}} mod nn); at each step, a connected subset of the graph is chosen uniformly at random among all those of length at most LL, and the current permutation is shuffled by reversing the order of the letters over that subset. We show that the relaxation time τ(n,L)\tau (n,L), defined as the inverse of the spectral gap of the associated Markov generator, satisfies τ(n,L)=O(nn3L3)\tau (n,L)=O(n\vee \frac{n^3}{L^3}). Our results can be interpreted as strong evidence for a conjecture of R. Durrett predicting a similar behavior for the mixing time of the chain.

Keywords

Cite

@article{arxiv.math/0412449,
  title  = {Relaxation time of $L$-reversal chains and other chromosome shuffles},
  author = {N. Cancrini and P. Caputo and F. Martinelli},
  journal= {arXiv preprint arXiv:math/0412449},
  year   = {2007}
}

Comments

Published at http://dx.doi.org/10.1214/105051606000000295 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org)