English

Periodically driven stochastic un- and refolding transitions of biopolymers

Soft Condensed Matter 2009-11-10 v1

Abstract

Mechanical single molecule experiments probe the energy profile of biomolecules. We show that in the case of a profile with two minima (like folded/unfolded) periodic driving leads to a stochastic resonance-like phenomenon. We demonstrate that the analysis of such data can be used to extract four basic parameters of such a transition and discuss the statistical requirements of the data acquisition. As advantages of the proposed scheme, a polymeric linker is explicitly included and thermal fluctuations within each well need not to be resolved.

Keywords

Cite

@article{arxiv.cond-mat/0409623,
  title  = {Periodically driven stochastic un- and refolding transitions of biopolymers},
  author = {O. Braun and U. Seifert},
  journal= {arXiv preprint arXiv:cond-mat/0409623},
  year   = {2009}
}

Comments

7 pages, 5 figures, submitted to EPL