English

Optimal Control of the F${_1}$-ATPase Molecular Motor

Statistical Mechanics 2022-12-29 v2 Soft Condensed Matter

Abstract

F1_{1}-ATPase is a rotary molecular motor that \emph{in vivo} is subject to strong nonequilibrium driving forces. There is great interest in understanding the operational principles governing its high efficiency of free-energy transduction. Here we use a near-equilibrium framework to design a non-trivial control protocol to minimize dissipation in rotating F1_{1} to synthesize ATP. We find that the designed protocol requires much less work than a naive (constant-velocity) protocol across a wide range of protocol durations. Our analysis points to a possible mechanism for energetically efficient driving of F1_{1} \emph{in vivo} and provides insight into free-energy transduction for a broader class of biomolecular and synthetic machines.

Keywords

Cite

@article{arxiv.2210.02072,
  title  = {Optimal Control of the F${_1}$-ATPase Molecular Motor},
  author = {Deepak Gupta and Steven J. Large and Shoichi Toyabe and David A. Sivak},
  journal= {arXiv preprint arXiv:2210.02072},
  year   = {2022}
}

Comments

7 pages + SI, Minor revision