English

On persistence and cascade decompositions of chemical reaction networks

Molecular Networks 2009-05-12 v1

Abstract

New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement those obtained by the authors in previous work. The new results allow the consideration of reaction rates which are time-varying, thus incorporating the effects of external signals, and also relax the assumption of existence of global conservation laws, thus allowing for inflows (production) and outflows (degradation). For time-invariant networks parameter-dependent conditions for persistence of certain classes of networks are provided. As an illustration, two networks arising in the systems biology literature are analyzed, namely a hypoxia and an apoptosis network.

Keywords

Cite

@article{arxiv.0905.1332,
  title  = {On persistence and cascade decompositions of chemical reaction networks},
  author = {David Angeli and Patrick De Leenheer and Eduardo Sontag},
  journal= {arXiv preprint arXiv:0905.1332},
  year   = {2009}
}

Comments

21 pages, 3 figures