English

On fixable families of Boolean networks

Combinatorics 2018-04-06 v1 Discrete Mathematics

Abstract

The asynchronous dynamics associated with a Boolean network f:{0,1}n{0,1}nf : \{0,1\}^n \to \{0,1\}^n is a finite deterministic automaton considered in many applications. The set of states is {0,1}n\{0,1\}^n, the alphabet is [n][n], and the action of letter ii on a state xx consists in either switching the iith component if fi(x)xif_i(x)\neq x_i or doing nothing otherwise. This action is extended to words in the natural way. We then say that a word ww {\em fixes} ff if, for all states xx, the result of the action of ww on xx is a fixed point of ff. A whole family of networks is fixable if its members are all fixed by the same word, and the fixing length of the family is the minimum length of such a word. In this paper, we are interested in families of Boolean networks with relatively small fixing lengths. Firstly, we prove that fixing length of the family of networks with acyclic asynchronous graphs is Θ(n2n)\Theta(n 2^n). Secondly, it is known that the fixing length of the whole family of monotone networks is O(n3)O(n^3). We then exhibit two families of monotone networks with fixing length Θ(n)\Theta(n) and Θ(n2)\Theta(n^2) respectively, namely monotone networks with tree interaction graphs and conjunctive networks with symmetric interaction graphs.

Keywords

Cite

@article{arxiv.1804.01931,
  title  = {On fixable families of Boolean networks},
  author = {Maximilien Gadouleau and Adrien Richard},
  journal= {arXiv preprint arXiv:1804.01931},
  year   = {2018}
}

Comments

Text overlap with arXiv:1802.02068 in Sections 1 and 2 (Introduction and Notation)