English

Modeling Charge-Sign Asymmetric Solvation Free Energies With Nonlinear Boundary Conditions

Chemical Physics 2015-06-23 v1 Computational Engineering, Finance, and Science Computational Physics

Abstract

We show that charge-sign-dependent asymmetric hydration can be modeled accurately using linear Poisson theory but replacing the standard electric-displacement boundary condition with a simple nonlinear boundary condition. Using a single multiplicative scaling factor to determine atomic radii from molecular dynamics Lennard-Jones parameters, the new model accurately reproduces MD free-energy calculations of hydration asymmetries for (i) monatomic ions, (ii) titratable amino acids in both their protonated and unprotonated states, and (iii) the Mobley "bracelet" and "rod" test problems [J. Phys. Chem. B, v. 112:2408, 2008]. Remarkably, the model also justifies the use of linear response expressions for charging free energies. Our boundary-element method implementation demonstrates the ease with which other continuum-electrostatic solvers can be extended to include asymmetry.

Keywords

Cite

@article{arxiv.1409.7418,
  title  = {Modeling Charge-Sign Asymmetric Solvation Free Energies With Nonlinear Boundary Conditions},
  author = {Jaydeep P. Bardhan and Matthew G. Knepley},
  journal= {arXiv preprint arXiv:1409.7418},
  year   = {2015}
}

Comments

7 pages, 2 figures, accepted to Journal of Chemical Physics