Detecting and quantifying bone changes in micro-CT scans of rodents is a common task in preclinical drug development studies. However, this task is manual, time-consuming and subject to inter- and intra-observer variability. In 2024, Anonymous Company organized an internal challenge to develop models for automatic bone quantification. We prepared and annotated a high-quality dataset of 3D μCT bone scans from 83 mice. The challenge attracted over 80 AI scientists from around the globe who formed 23 teams. The participants were tasked with developing a solution to identify the plane where the bone growth happens, which is essential for fully automatic segmentation of trabecular bone. As a result, six computer vision solutions were developed that can accurately identify the location of the growth plate plane. The solutions achieved the mean absolute error of 1.91±0.87 planes from the ground truth on the test set, an accuracy level acceptable for practical use by a radiologist. The annotated 3D scans dataset along with the six solutions and source code, is being made public, providing researchers with opportunities to develop and benchmark their own approaches. The code, trained models, and the data will be shared.
@article{arxiv.2411.17260,
title = {MiceBoneChallenge: Micro-CT public dataset and six solutions for automatic growth plate detection in micro-CT mice bone scans},
author = {Nikolay Burlutskiy and Marija Kekic and Jordi de la Torre and Philipp Plewa and Mehdi Boroumand and Julia Jurkowska and Borjan Venovski and Maria Chiara Biagi and Yeman Brhane Hagos and Roksana Malinowska-Traczyk and Yibo Wang and Jacek Zalewski and Paula Sawczuk and Karlo Pintarić and Fariba Yousefi and Leif Hultin},
journal= {arXiv preprint arXiv:2411.17260},
year = {2024}
}