English

Level-k Phylogenetic Network can be Constructed from a Dense Triplet Set in Polynomial Time

Populations and Evolution 2009-01-13 v1

Abstract

Given a dense triplet set T\mathcal{T}, there arise two interesting questions: Does there exists any phylogenetic network consistent with T\mathcal{T}? And if so, can we find an effective algorithm to construct one? For cases of networks of levels k=0k=0 or 1 or 2, these questions were answered with effective polynomial algorithms. For higher levels kk, partial answers were recently obtained with an O(Tk+1)O(|\mathcal{T}|^{k+1}) time algorithm for simple networks. In this paper we give a complete answer to the general case. The main idea is to use a special property of SN-sets in a level-k network. As a consequence, we can also find the level-k network with the minimum number of reticulations in polynomial time.

Keywords

Cite

@article{arxiv.0901.1657,
  title  = {Level-k Phylogenetic Network can be Constructed from a Dense Triplet Set in Polynomial Time},
  author = {Thu-Hien To and Michel Habib},
  journal= {arXiv preprint arXiv:0901.1657},
  year   = {2009}
}
R2 v1 2026-06-21T11:59:57.898Z