Level-k Phylogenetic Network can be Constructed from a Dense Triplet Set in Polynomial Time
Populations and Evolution
2009-01-13 v1
Abstract
Given a dense triplet set , there arise two interesting questions: Does there exists any phylogenetic network consistent with ? And if so, can we find an effective algorithm to construct one? For cases of networks of levels or 1 or 2, these questions were answered with effective polynomial algorithms. For higher levels , partial answers were recently obtained with an time algorithm for simple networks. In this paper we give a complete answer to the general case. The main idea is to use a special property of SN-sets in a level-k network. As a consequence, we can also find the level-k network with the minimum number of reticulations in polynomial time.
Keywords
Cite
@article{arxiv.0901.1657,
title = {Level-k Phylogenetic Network can be Constructed from a Dense Triplet Set in Polynomial Time},
author = {Thu-Hien To and Michel Habib},
journal= {arXiv preprint arXiv:0901.1657},
year = {2009}
}