ITM Probe: analyzing information flow in protein networks
Molecular Networks
2010-04-29 v1 Quantitative Methods
Abstract
Summary: Founded upon diffusion with damping, ITM Probe is an application for modeling information flow in protein interaction networks without prior restriction to the sub-network of interest. Given a context consisting of desired origins and destinations of information, ITM Probe returns the set of most relevant proteins with weights and a graphical representation of the corresponding sub-network. With a click, the user may send the resulting protein list for enrichment analysis to facilitate hypothesis formation or confirmation. Availability: ITM Probe web service and documentation can be found at www.ncbi.nlm.nih.gov/CBBresearch/qmbp/mn/itm_probe
Keywords
Cite
@article{arxiv.0904.2770,
title = {ITM Probe: analyzing information flow in protein networks},
author = {Aleksandar Stojmirović and Yi-Kuo Yu},
journal= {arXiv preprint arXiv:0904.2770},
year = {2010}
}
Comments
5 pages, 1 figure