English

Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study

Soft Condensed Matter 2021-08-11 v2 Statistical Mechanics

Abstract

Using Langevin dynamics simulations, we study the hysteresis in unzipping of longer double stranded DNA chains whose ends are subjected to a time dependent periodic force with frequency ω\omega and amplitude GG keeping the other end fixed. We find that the area of the hysteresis loop, AloopA_{loop}, scales as 1/ω1/\omega at higher frequencies, whereas it scales as (GGc)αωβ(G-G_c)^{\alpha}\omega^{\beta} with exponents α=1\alpha=1 and β=1.25\beta=1.25 in the low frequency regime. These values are same as the exponents obtained in Monte Carlo simulation studies of a directed self avoiding walk model of a homopolymer DNA [R. Kapri, Phys. Rev. E 90, 062719 (2014)], and the block copolymer DNA [R. K. Yadav and R. Kapri, Phys. Rev. E 103, 012413 (2021)] on a square lattice, and differs from the values reported earlier using Langevin dynamics simulation studies on a much shorter DNA hairpins.

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Cite

@article{arxiv.2104.07170,
  title  = {Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study},
  author = {Rajeev Kapri},
  journal= {arXiv preprint arXiv:2104.07170},
  year   = {2021}
}

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