Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study
Abstract
Using Langevin dynamics simulations, we study the hysteresis in unzipping of longer double stranded DNA chains whose ends are subjected to a time dependent periodic force with frequency and amplitude keeping the other end fixed. We find that the area of the hysteresis loop, , scales as at higher frequencies, whereas it scales as with exponents and in the low frequency regime. These values are same as the exponents obtained in Monte Carlo simulation studies of a directed self avoiding walk model of a homopolymer DNA [R. Kapri, Phys. Rev. E 90, 062719 (2014)], and the block copolymer DNA [R. K. Yadav and R. Kapri, Phys. Rev. E 103, 012413 (2021)] on a square lattice, and differs from the values reported earlier using Langevin dynamics simulation studies on a much shorter DNA hairpins.
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Cite
@article{arxiv.2104.07170,
title = {Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study},
author = {Rajeev Kapri},
journal= {arXiv preprint arXiv:2104.07170},
year = {2021}
}
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