English

Ghostbuster: a phase retrieval diffraction tomography algorithm for cryo-EM

Computational Physics 2024-01-04 v4 Optics

Abstract

Ewald sphere curvature correction, which extends beyond the projection approximation, stretches the shallow depth of field in cryo-EM reconstructions of thick particles. Here we show that even for previously assumed thin particles, reconstruction artifacts which we refer to as ghosts can appear. By retrieving the lost phases of the electron exitwaves and accounting for the first Born approximation scattering within the particle, we show that these ghosts can be effectively eliminated. Our simulations demonstrate how such ghostbusting can improve reconstructions as compared to existing state-of-the-art software. Like ptychographic cryo-EM, our Ghostbuster algorithm uses phase retrieval to improve reconstructions, but unlike the former, we do not need to modify the existing data acquisition pipelines.

Keywords

Cite

@article{arxiv.2312.08965,
  title  = {Ghostbuster: a phase retrieval diffraction tomography algorithm for cryo-EM},
  author = {Joel Yeo and Benedikt J. Daurer and Dari Kimanius and Deepan Balakrishnan and Tristan Bepler and Yong Zi Tan and N. Duane Loh},
  journal= {arXiv preprint arXiv:2312.08965},
  year   = {2024}
}

Comments

20 pages, 11 figures. Submitted to IUCrJ

R2 v1 2026-06-28T13:50:59.066Z