English

Extracting Structural Information of a Heteropolymer from Force-Extension Curves

Soft Condensed Matter 2009-11-10 v1

Abstract

We present a theory for the reverse analysis on the sequence information of a single H/P two-letter random hetero-polymer (RHP) from its force-extension(f-z) curves during quasi static stretching. Upon stretching of a self-assembled RHP, it undergoes several structural transitions. The typical elastic response of a hetero-polymeric globule is a set of overlapping saw-tooth patterns. With consideration of the height and the position of the overlapping saw-tooth shape, we analyze the possibility of extracting the binding energies of the internal domains and the corresponding block sizes of the contributing conformations.

Keywords

Cite

@article{arxiv.cond-mat/0412388,
  title  = {Extracting Structural Information of a Heteropolymer from Force-Extension Curves},
  author = {E. Jarkova and Nam-Kyung Lee and S. Obukhov},
  journal= {arXiv preprint arXiv:cond-mat/0412388},
  year   = {2009}
}

Comments

5 figures 7 pages