ExprTarget: An Integrative Approach to Predicting Human MicroRNA Targets
Quantitative Methods
2013-08-09 v1 Genomics
Authors:
Eric R. Gamazon
, Hae-Kyung Im
, Shiwei Duan
, Yves A. Lussier
, Nancy J. Cox
, M. Eileen Dolan
, Wei Zhang
Abstract
We developed an online database, ExprTargetDB, of human miRNA targets predicted by an approach that integrates gene expression profiling into a broader framework involving important features of miRNA target site predictions.
Cite
@article{arxiv.1308.1865,
title = {ExprTarget: An Integrative Approach to Predicting Human MicroRNA Targets},
author = {Eric R. Gamazon and Hae-Kyung Im and Shiwei Duan and Yves A. Lussier and Nancy J. Cox and M. Eileen Dolan and Wei Zhang},
journal= {arXiv preprint arXiv:1308.1865},
year = {2013}
}
Related papers
View all related →
Genomics · Quantitative Biology
miRKatAI: An Integrated Database and Multi-agent AI system for microRNA Research
Karen Guerrero-Vazquez, Jacopo Umberto Verga, Pilib O Broin, Eva Szegezdi +1
2025-08-14
Genomics · Quantitative Biology
TargetNet: Functional microRNA Target Prediction with Deep Neural Networks
Seonwoo Min, Byunghan Lee, Sungroh Yoon
2021-10-14
Machine Learning · Computer Science
deepTarget: End-to-end Learning Framework for microRNA Target Prediction using Deep Recurrent Neural Networks
Byunghan Lee, Junghwan Baek, Seunghyun Park, Sungroh Yoon
2016-09-27
Genomics · Quantitative Biology
Comprehensive overview and assessment of miRNA target prediction tools in human and drosophila melanogaster
Muniba Faiza, Khushnuma Tanveer, Saman Fatihi, Yonghua Wang +1
2020-05-01
Applications · Statistics
A Bayesian graphical modeling approach to microRNA regulatory network inference
Francesco C. Stingo, Yian A. Chen, Marina Vannucci, Marianne Barrier +1
2011-01-10
Genomics · Quantitative Biology
MicroRNA Interaction network in human: implications of clustered microRNA in biological pathways and genetic diseases
Sushmita Mookherjee, Mithun Sinha, Saikat Mukhopadhyay, Nitai P. Bhattacharyya +1
2010-09-03
Genomics · Quantitative Biology
MicroRNAs -- targeting and target prediction
Takaya Saito, Pål Sætrom
2021-07-08
Genomics · Quantitative Biology
Predicting Gene Expression Between Species with Neural Networks
Peter Eastman, Vijay S. Pande
2019-07-09
Genomics · Quantitative Biology
Probe region expression estimation for RNA-seq data for improved microarray comparability
Karolis Uziela, Antti Honkela
2014-10-16
Computation and Language · Computer Science
ProbGate at EHRSQL 2024: Enhancing SQL Query Generation Accuracy through Probabilistic Threshold Filtering and Error Handling
Sangryul Kim, Donghee Han, Sehyun Kim
2024-04-26
Genomics · Quantitative Biology
Integrating diverse datasets improves developmental enhancer prediction
Genevieve D. Erwin, Rebecca M. Truty, Dennis Kostka, Katherine S. Pollard +1
2015-06-17
Biomolecules · Quantitative Biology
Drug-target affinity prediction method based on consistent expression of heterogeneous data
Boyuan Liu
2022-11-15
Methodology · Statistics
APTER: Aggregated Prognosis Through Exponential Reweighting
Kristiaan Pelckmans, Liu Yang
2020-02-21
Biomolecules · Quantitative Biology
Machine learning for RNA-targeting drug design
Wissam Karroucha, Carlos Oliver, Veronique Stoven, Vincent Mallet
2025-12-18
Databases · Computer Science
UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers
Yuwei Miao, Yuzhi Guo, Hehuan Ma, Jingquan Yan +4
2024-12-18
Computational Engineering, Finance, and Science · Computer Science
Unsupervised Gene Expression Data using Enhanced Clustering Method
T. Chandrasekhar, K. Thangavel, E. Elayaraja, E. N. Sathishkumar
2013-07-15
Methodology · Statistics
Predictive analysis of microarray data
Paulo C. Marques F., Carlos A. de B. Pereira
2022-03-09
Machine Learning · Computer Science
MTPNet: Multi-Grained Target Perception for Unified Activity Cliff Prediction
Zishan Shu, Yufan Deng, Hongyu Zhang, Zhiwei Nie +1
2025-06-09
Quantitative Methods · Quantitative Biology
Deep Neural Network Based Precursor microRNA Prediction on Eleven Species
Jaya Thomas, Lee Sael
2017-04-13
Machine Learning · Computer Science
DeepSelective: Interpretable Prognosis Prediction via Feature Selection and Compression in EHR Data
Ruochi Zhang, Qian Yang, Xiaoyang Wang, Tian Wang +9
2025-06-23
Databases · Computer Science
PDBMine: A Reformulation of the Protein Data Bank to Facilitate Structural Data Mining
Casey A Cole, Christopher Ott, Diego Valdes, Homayoun Valafar
2019-11-21
Computational Engineering, Finance, and Science · Computer Science
Generalizable and explainable prediction of potential miRNA-disease associations based on heterogeneous graph learning
Yi Zhou, Meixuan Wu, Chengzhou Ouyang, Min Zhu
2023-08-29
Machine Learning · Computer Science
Hierarchical Target-Attentive Diagnosis Prediction in Heterogeneous Information Networks
Anahita Hosseini, Tyler Davis, Majid Sarrafzadeh
2019-12-24
Machine Learning · Computer Science
ExBEHRT: Extended Transformer for Electronic Health Records to Predict Disease Subtypes & Progressions
Maurice Rupp, Oriane Peter, Thirupathi Pattipaka
2023-08-14
Machine Learning · Computer Science
Guide-Guard: Off-Target Predicting in CRISPR Applications
Joseph Bingham, Netanel Arussy, Saman Zonouz
2026-02-19