English

Experimental test of Sinai's model in DNA unzipping

Disordered Systems and Neural Networks 2023-05-31 v2 Biomolecules

Abstract

The experimental measurement of correlation functions and critical exponents in disordered systems is key to testing renormalization group (RG) predictions. We mechanically unzip single DNA hairpins with optical tweezers, an experimental realization of the diffusive motion of a particle in a one-dimensional random force field, known as the Sinai model. We measure the unzipping forces FwF_w as a function of the trap position ww in equilibrium and calculate the force-force correlator Δm(w)\Delta_m(w), its amplitude, and correlation length, finding agreement with theoretical predictions. We study the universal scaling properties since the effective trap stiffness m2m^2 decreases upon unzipping. Fluctuations of the position of the base pair at the unzipping junction uu scales as umζu \sim m^{-\zeta}, with a roughness exponent ζ=1.34±0.06 \zeta=1.34\pm0.06, in agreement with the analytical prediction ζ=43\zeta = \frac{4}{3}. Our study provides a single-molecule test of the functional RG approach for disordered elastic systems in equilibrium.

Keywords

Cite

@article{arxiv.2210.00777,
  title  = {Experimental test of Sinai's model in DNA unzipping},
  author = {Cathelijne ter Burg and Paolo Rissone and Marc Rico-Pasto and Felix Ritort and Kay Joerg Wiese},
  journal= {arXiv preprint arXiv:2210.00777},
  year   = {2023}
}

Comments

5 main + 6 supplementary pages, 8 figures