English

Dielectric trapping of biopolymers translocating through insulating membranes

Soft Condensed Matter 2018-11-12 v1

Abstract

Sensitive sequencing of biopolymers by nanopore-based translocation techniques requires extension of the time spent by the molecule in the pore. We develop an electrostatic theory of polymer translocation to show that the translocation time can be extended via the dielectric trapping of the polymer. In dilute salt conditions, the dielectric contrast between the low permittivity membrane and large permittivity solvent gives rise to attractive interactions between the cis and trans portions of the polymer. This self-attraction acts as a dielectric trap that can enhance the translocation time by orders of magnitude. We also find that electrostatic interactions result in the piecewise scaling of the translocation time τ\tau with the polymer length LL. In the short polymer regime L10L\lesssim10 nm where the external drift force dominates electrostatic polymer interactions, the translocation is characterized by the drift behavior τL2\tau\sim L^2. In the intermediate length regime 10  nmLκb110\;{\rm nm}\lesssim L\lesssim\kappa_{\rm b}^{-1} where κb\kappa_{\rm b} is the Debye-H\"{u}ckel screening parameter, the dielectric trap takes over the drift force. As a result, increasing polymer length leads to quasi-exponential growth of the translocation time. Finally, in the regime of long polymers Lκb1L\gtrsim\kappa_{\rm b}^{-1} where salt screening leads to the saturation of the dielectric trap, the translocation time grows linearly as τL\tau\sim L. This strong departure from the drift behavior highlights the essential role played by electrostatic interactions in polymer translocation.

Keywords

Cite

@article{arxiv.1810.06126,
  title  = {Dielectric trapping of biopolymers translocating through insulating membranes},
  author = {Sahin Buyukdagli and Jalal Sarabadani and Tapio Ala-Nissila},
  journal= {arXiv preprint arXiv:1810.06126},
  year   = {2018}
}