Characterizations of undirected 2-quasi best match graphs
Abstract
Bipartite best match graphs (BMG) and their generalizations arise in mathematical phylogenetics as combinatorial models describing evolutionary relationships among related genes in a pair of species. In this work, we characterize the class of \emph{undirected 2-quasi-BMGs} (un2qBMGs), which form a proper subclass of the -free chordal bipartite graphs. We show that un2qBMGs are exactly the class of bipartite graphs free of , , and the eight-vertex Sunlet graph. Equivalently, a bipartite graph is un2qBMG if and only if every connected induced subgraph contains a ``heart-vertex'' which is adjacent to all the vertices of the opposite color. We further provide a algorithm for the recognition of un2qBMGs that, in the affirmative case, constructs a labeled rooted tree that ``explains'' . Finally, since un2qBMGs coincide with the -free bi-cographs, they can also be recognized in linear time.
Keywords
Cite
@article{arxiv.2511.03592,
title = {Characterizations of undirected 2-quasi best match graphs},
author = {Annachiara Korchmaros and Guillaume E. Scholz and Peter F. Stadler},
journal= {arXiv preprint arXiv:2511.03592},
year = {2025}
}
Comments
24 pages, 6 figures