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Characterizations of undirected 2-quasi best match graphs

Combinatorics 2025-11-06 v1 Discrete Mathematics

Abstract

Bipartite best match graphs (BMG) and their generalizations arise in mathematical phylogenetics as combinatorial models describing evolutionary relationships among related genes in a pair of species. In this work, we characterize the class of \emph{undirected 2-quasi-BMGs} (un2qBMGs), which form a proper subclass of the P6P_6-free chordal bipartite graphs. We show that un2qBMGs are exactly the class of bipartite graphs free of P6P_6, C6C_6, and the eight-vertex Sunlet4_4 graph. Equivalently, a bipartite graph GG is un2qBMG if and only if every connected induced subgraph contains a ``heart-vertex'' which is adjacent to all the vertices of the opposite color. We further provide a O(V(G)3)O(|V(G)|^3) algorithm for the recognition of un2qBMGs that, in the affirmative case, constructs a labeled rooted tree that ``explains'' GG. Finally, since un2qBMGs coincide with the (P6,C6)(P_6,C_6)-free bi-cographs, they can also be recognized in linear time.

Keywords

Cite

@article{arxiv.2511.03592,
  title  = {Characterizations of undirected 2-quasi best match graphs},
  author = {Annachiara Korchmaros and Guillaume E. Scholz and Peter F. Stadler},
  journal= {arXiv preprint arXiv:2511.03592},
  year   = {2025}
}

Comments

24 pages, 6 figures