English

Cell-induced densification and tether formation in fibrous extracellular matrices with biomimetic physics-informed neural networks

Machine Learning 2026-05-05 v3 Numerical Analysis Numerical Analysis

Abstract

Nonconvex multi-well energies in cell-induced phase transitions give rise to fine-scale microstructures, low-regularity transition layers and sharp interfaces, all of which pose numerical challenges for physics-informed learning. Here we introduce biomimetic physics-informed neural networks (Bio-PINNs), which implement a near-to-far curriculum by progressively revealing the computational domain away from the cell boundary and combining this schedule with a deformation-uncertainty proxy that concentrates collocation points near evolving transition layers and tether-forming regions. Across single-cell and multicellular benchmarks, Bio-PINNs recover the densified phase more reliably near cell boundaries and in intercellular gaps, while capturing tether morphology more faithfully than representative ungated and residual-driven adaptive baselines.

Keywords

Cite

@article{arxiv.2603.29184,
  title  = {Cell-induced densification and tether formation in fibrous extracellular matrices with biomimetic physics-informed neural networks},
  author = {Anci Lin and Zhiwen Zhang and Wenju Zhao},
  journal= {arXiv preprint arXiv:2603.29184},
  year   = {2026}
}