English

Boolean constraint satisfaction problems for reaction networks

Molecular Networks 2014-10-14 v2 Disordered Systems and Neural Networks Statistical Mechanics

Abstract

We define and study a class of (random) Boolean constraint satisfaction problems representing minimal feasibility constraints for networks of chemical reactions. The constraints we consider encode, respectively, for hard mass-balance conditions (where the consumption and production fluxes of each chemical species are matched) and for soft mass-balance conditions (where a net production of compounds is in principle allowed). We solve these constraint satisfaction problems under the Bethe approximation and derive the corresponding Belief Propagation equations, that involve 8 different messages. The statistical properties of ensembles of random problems are studied via the population dynamics methods. By varying a chemical potential attached to the activity of reactions, we find first order transitions and strong hysteresis, suggesting a non-trivial structure in the space of feasible solutions.

Keywords

Cite

@article{arxiv.1306.2480,
  title  = {Boolean constraint satisfaction problems for reaction networks},
  author = {Alessandro Seganti and Andrea De Martino and Federico Ricci-Tersenghi},
  journal= {arXiv preprint arXiv:1306.2480},
  year   = {2014}
}

Comments

16 pages (incl. appendix)

R2 v1 2026-06-22T00:31:56.330Z