Bayesian nonparametric inference for discovery probabilities: credible intervals and large sample asymptotics
Abstract
Given a sample of size from a population of individuals belonging to different species with unknown proportions, a popular problem of practical interest consists in making inference on the probability that the -th draw coincides with a species with frequency in the sample, for any . This paper contributes to the methodology of Bayesian nonparametric inference for . Specifically, under the general framework of Gibbs-type priors we show how to derive credible intervals for a Bayesian nonparametric estimation of , and we investigate the large asymptotic behaviour of such an estimator. Of particular interest are special cases of our results obtained under the specification of the two parameter Poisson--Dirichlet prior and the normalized generalized Gamma prior, which are two of the most commonly used Gibbs-type priors. With respect to these two prior specifications, the proposed results are illustrated through a simulation study and a benchmark Expressed Sequence Tags dataset. To the best our knowledge, this illustration provides the first comparative study between the two parameter Poisson--Dirichlet prior and the normalized generalized Gamma prior in the context of Bayesian nonparemetric inference for .
Cite
@article{arxiv.1506.04915,
title = {Bayesian nonparametric inference for discovery probabilities: credible intervals and large sample asymptotics},
author = {Julyan Arbel and Stefano Favaro and Bernardo Nipoti and Yee Whye Teh},
journal= {arXiv preprint arXiv:1506.04915},
year = {2017}
}