English

Artificial Intelligence for CRISPR Guide RNA Design: Explainable Models and Off-Target Safety

Quantitative Methods 2025-08-29 v1 Artificial Intelligence Machine Learning

Abstract

CRISPR-based genome editing has revolutionized biotechnology, yet optimizing guide RNA (gRNA) design for efficiency and safety remains a critical challenge. Recent advances (2020--2025, updated to reflect current year if needed) demonstrate that artificial intelligence (AI), especially deep learning, can markedly improve the prediction of gRNA on-target activity and identify off-target risks. In parallel, emerging explainable AI (XAI) techniques are beginning to illuminate the black-box nature of these models, offering insights into sequence features and genomic contexts that drive Cas enzyme performance. Here we review how state-of-the-art machine learning models are enhancing gRNA design for CRISPR systems, highlight strategies for interpreting model predictions, and discuss new developments in off-target prediction and safety assessment. We emphasize breakthroughs from top-tier journals that underscore an interdisciplinary convergence of AI and genome editing to enable more efficient, specific, and clinically viable CRISPR applications.

Keywords

Cite

@article{arxiv.2508.20130,
  title  = {Artificial Intelligence for CRISPR Guide RNA Design: Explainable Models and Off-Target Safety},
  author = {Alireza Abbaszadeh and Armita Shahlai},
  journal= {arXiv preprint arXiv:2508.20130},
  year   = {2025}
}

Comments

29 pages, 5 figures, 2 tables, 42 cited references

R2 v1 2026-07-01T05:08:57.836Z