English

Antiparallel d-stable Traces and a Stronger Version of Ore Problem

Combinatorics 2019-08-09 v3

Abstract

In 20132013 a novel self-assembly strategy for polypeptide nanostructure design which could lead to significant developments in biotechnology was presented in [Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments, Nature Chem. Bio. 9 (2013) 362--366]. It was since observed that a polyhedron PP can be realized by interlocking pairs of polypeptide chains if its corresponding graph G(P)G(P) admits a strong trace. It was since also demonstrated that a similar strategy can also be expanded to self-assembly of designed DNA [Design principles for rapid folding of knotted DNA nanostructures, Nature communications 7 (2016) 1--8.]. In this direction, in the present paper we characterize graphs which admit closed walk which traverses every edge exactly once in each direction and for every vertex vv, there is no subset NN of its neighbors, with 1Nd1 \leq |N| \leq d, such that every time the walk enters vv from NN, it also exits to a vertex in NN. This extends C. Thomassen's characterization [Bidirectional retracting-free double tracings and upper embeddability of graphs, J. Combin. Theory Ser. B 50 (1990) 198--207] for the case d=1d = 1.

Keywords

Cite

@article{arxiv.1403.5806,
  title  = {Antiparallel d-stable Traces and a Stronger Version of Ore Problem},
  author = {Jernej Rus},
  journal= {arXiv preprint arXiv:1403.5806},
  year   = {2019}
}

Comments

22 pages, 8 figures

R2 v1 2026-06-22T03:32:29.192Z