English

A simple electrostatic model applicable to biomolecular recognition

Classical Physics 2013-05-29 v1 Biological Physics

Abstract

An exact, analytic solution for a simple electrostatic model applicable to biomolecular recognition is presented. In the model, a layer of high dielectric constant material (representative of the solvent, water) whose thickness may vary separates two regions of low dielectric constant material (representative of proteins, DNA, RNA, or similar materials), in each of which is embedded a point charge. For identical charges, the presence of the screening layer always lowers the energy compared to the case of point charges in an infinite medium of low dielectric constant. Somewhat surprisingly, the presence of a sufficiently thick screening layer also lowers the energy compared to the case of point charges in an infinite medium of high dielectric constant. For charges of opposite sign, the screening layer always lowers the energy compared to the case of point charges in an infinite medium of either high or low dielectric constant. The behavior of the energy leads to a substantially increased repulsive force between charges of the same sign. The repulsive force between charges of opposite signs is weaker than in an infinite medium of low dielectric constant material but stronger than in an infinite medium of high dielectric constant material. The presence of this behavior, which we name asymmetric screening, in the simple system presented here confirms the generality of the behavior that was established in a more complicated system of an arbitrary number of charged dielectric spheres in an infinite solvent.

Keywords

Cite

@article{arxiv.0910.0034,
  title  = {A simple electrostatic model applicable to biomolecular recognition},
  author = {T. P. Doerr and Yi-Kuo Yu},
  journal= {arXiv preprint arXiv:0910.0034},
  year   = {2013}
}

Comments

15 pages, 6 figures

R2 v1 2026-06-21T13:52:42.896Z