English

A Hessian Geometric Structure of Chemical Thermodynamic Systems with Stoichiometric Constraints

Statistical Mechanics 2022-08-30 v2 Biological Physics Chemical Physics

Abstract

We establish a Hessian geometric structure in chemical thermodynamics which describes chemical reaction networks (CRNs) with equilibrium states. In our setup, the ideal gas assumption and mass action kinetics are not required. The existence and uniqueness condition of the equilibrium state is derived by using the Legendre duality inherent to the Hessian structure. The entropy production during a relaxation to the equilibrium state can be evaluated by the Bregman divergence. Furthermore, the equilibrium state is characterized by four distinct minimization problems of the divergence, which are obtained from the generalized Pythagorean theorem originating in the dual flatness. For the ideal gas case, we confirm that our existence and uniqueness condition implies Birch's theorem, and that the entropy production represented by the divergence coincides with the generalized Kullback-Leibler divergence. In addition, under mass action kinetics, our general framework reproduces the local detailed balance condition.

Keywords

Cite

@article{arxiv.2112.12403,
  title  = {A Hessian Geometric Structure of Chemical Thermodynamic Systems with Stoichiometric Constraints},
  author = {Yuki Sughiyama and Dimitri Loutchko and Atsushi Kamimura and Tetsuya J. Kobayashi},
  journal= {arXiv preprint arXiv:2112.12403},
  year   = {2022}
}

Comments

15 pages, 5 figures