Cell Behavior · Quantitative Biology
Cell types and ontologies of the Human Cell Atlas
David Osumi-Sutherland, Chuan Xu, Maria Keays, Peter V. Kharchenko +3
2021-11-10
Genomics · Quantitative Biology
Uncertainty Quantification for Atlas-Level Cell Type Transfer
Jan Engelmann, Leon Hetzel, Giovanni Palla, Lisa Sikkema +2
2022-11-09
Subcellular Processes · Quantitative Biology
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh +4
2024-05-07
Other Quantitative Biology · Quantitative Biology
Advances in Machine Learning, Statistical Methods, and AI for Single-Cell RNA Annotation Using Raw Count Matrices in scRNA-seq Data
Megha Patel, Nimish Magre, Himanshi Motwani, Nik Bear Brown
2024-06-11
Genomics · Quantitative Biology
Insights, opportunities and challenges provided by large cell atlases
Martin Hemberg, Federico Marini, Shila Ghazanfar, Ahmad Al Ajami +26
2024-08-14
Tissues and Organs · Quantitative Biology
Complementing cell taxonomies with a multicellular functional analysis of tissues
Ricardo Omar Ramirez Flores, Philipp Sven Lars Schäfer, Leonie Küchenhoff, Julio Saez-Rodriguez
2024-03-12
Other Quantitative Biology · Quantitative Biology
The Cell Ontology in the age of single-cell omics
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood +31
2026-02-16
Genomics · Quantitative Biology
Deep Learning in Single-Cell and Spatial Transcriptomics Data Analysis: Advances and Challenges from a Data Science Perspective
Shuang Ge, Shuqing Sun, Huan Xu, Qiang Cheng +1
2024-12-09
Quantitative Methods · Quantitative Biology
Deep Learning in Single-Cell Analysis
Dylan Molho, Jiayuan Ding, Zhaoheng Li, Hongzhi Wen +11
2022-11-08
Quantitative Methods · Quantitative Biology
Cell-cell Communication Inference and Analysis: Biological Mechanisms, Computational Approaches, and Future Opportunities
Xiangzheng Cheng, Haili Huang, Ye Su, Qing Nie +2
2026-03-24
Applications · Statistics
Modeling Cell Developmental Trajectory using Multinomial Unbalanced Optimal Transport
Junhao Zhu, Kevin Zhang, Zhaolei Zhang, Dehan Kong
2026-03-30
Tissues and Organs · Quantitative Biology
The Human Cell Atlas White Paper
Aviv Regev, Sarah Teichmann, Orit Rozenblatt-Rosen, Michael Stubbington +77
2018-10-15