English

A compendium of covariances and correlation coefficients of coalescent tree properties

Populations and Evolution 2022-05-24 v2

Abstract

Gene genealogies are frequently studied by measuring properties such as their height (HH), length (LL), sum of external branches (EE), sum of internal branches (II), and mean of their two basal branches (BB), and the coalescence times that contribute to the other genealogical features (TT). These tree properties and their relationships can provide insight into the effects of population-genetic processes on genealogies and genetic sequences. Here, under the coalescent model, we study the 15 correlations among pairs of features of genealogical trees: HnH_n, LnL_n, EnE_n, InI_n, BnB_n, and TkT_k for a sample of size nn, with 2kn2 \leq k \leq n. We report high correlations among HnH_n, LnL_n, In,I_n, and BnB_n, with all pairwise correlations of these quantities having values greater than or equal to 6[6ζ(3)+6π2]/(π18+9π2π4)0.84930\sqrt{6} [6 \zeta(3) + 6 - \pi^2] / ( \pi \sqrt{18 + 9\pi^2 - \pi^4}) \approx 0.84930 in the limit as nn \rightarrow \infty. Although EnE_n has an expectation of 2 for all nn and HnH_n has expectation 2 in the limit as nn \rightarrow \infty, their limiting correlation is 0. The results contribute toward understanding features of the shapes of coalescent trees.

Keywords

Cite

@article{arxiv.2103.13467,
  title  = {A compendium of covariances and correlation coefficients of coalescent tree properties},
  author = {Egor Alimpiev and Noah A Rosenberg},
  journal= {arXiv preprint arXiv:2103.13467},
  year   = {2022}
}