English

Toward Valid Generative Clinical Trial Data with Survival Endpoints

Machine Learning 2025-11-21 v1 Applications Methodology Machine Learning

Abstract

Clinical trials face mounting challenges: fragmented patient populations, slow enrollment, and unsustainable costs, particularly for late phase trials in oncology and rare diseases. While external control arms built from real-world data have been explored, a promising alternative is the generation of synthetic control arms using generative AI. A central challenge is the generation of time-to-event outcomes, which constitute primary endpoints in oncology and rare disease trials, but are difficult to model under censoring and small sample sizes. Existing generative approaches, largely GAN-based, are data-hungry, unstable, and rely on strong assumptions such as independent censoring. We introduce a variational autoencoder (VAE) that jointly generates mixed-type covariates and survival outcomes within a unified latent variable framework, without assuming independent censoring. Across synthetic and real trial datasets, we evaluate our model in two realistic scenarios: (i) data sharing under privacy constraints, where synthetic controls substitute for original data, and (ii) control-arm augmentation, where synthetic patients mitigate imbalances between treated and control groups. Our method outperforms GAN baselines on fidelity, utility, and privacy metrics, while revealing systematic miscalibration of type I error and power. We propose a post-generation selection procedure that improves calibration, highlighting both progress and open challenges for generative survival modeling.

Keywords

Cite

@article{arxiv.2511.16551,
  title  = {Toward Valid Generative Clinical Trial Data with Survival Endpoints},
  author = {Perrine Chassat and Van Tuan Nguyen and Lucas Ducrot and Emilie Lanoy and Agathe Guilloux},
  journal= {arXiv preprint arXiv:2511.16551},
  year   = {2025}
}

Comments

P. Chassat and V.T. Nguyen contributed equally to this work

R2 v1 2026-07-01T07:47:39.311Z