Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s
Abstract
Cographs are graphs in which no four vertices induce a simple connected path . Cograph editing is to find for a given graph a set of at most edge additions and deletions that transform into a cograph. This combinatorial optimization problem is NP-hard. It has, recently found applications in the context of phylogenetics, hence good heuristics are of practical importance. It is well-known that the cograph editing problem can be solved independently on the so-called strong prime modules of the modular decomposition of . We show here that editing the induced 's of a given graph is equivalent to resolving strong prime modules by means of a newly defined merge operation on the submodules. This observation leads to a new exact algorithm for the cograph editing problem that can be used as a starting point for the construction of novel heuristics.
Cite
@article{arxiv.1509.06983,
title = {Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s},
author = {Marc Hellmuth and Adrian Fritz and Nicolas Wieseke and Peter F. Stadler},
journal= {arXiv preprint arXiv:1509.06983},
year = {2015}
}