English

Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s

Discrete Mathematics 2015-09-25 v2

Abstract

Cographs are graphs in which no four vertices induce a simple connected path P4P_4. Cograph editing is to find for a given graph G=(V,E)G = (V,E) a set of at most kk edge additions and deletions that transform GG into a cograph. This combinatorial optimization problem is NP-hard. It has, recently found applications in the context of phylogenetics, hence good heuristics are of practical importance. It is well-known that the cograph editing problem can be solved independently on the so-called strong prime modules of the modular decomposition of GG. We show here that editing the induced P4P_4's of a given graph is equivalent to resolving strong prime modules by means of a newly defined merge operation on the submodules. This observation leads to a new exact algorithm for the cograph editing problem that can be used as a starting point for the construction of novel heuristics.

Keywords

Cite

@article{arxiv.1509.06983,
  title  = {Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s},
  author = {Marc Hellmuth and Adrian Fritz and Nicolas Wieseke and Peter F. Stadler},
  journal= {arXiv preprint arXiv:1509.06983},
  year   = {2015}
}
R2 v1 2026-06-22T11:03:38.229Z