Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees
Abstract
A distance-based method to reconstruct a phylogenetic tree with leaves takes a distance matrix, symmetric matrix with s in the diagonal, as its input and reconstructs a tree with leaves using tools in combinatorics. A safety radius is a radius from a tree metric (a distance matrix realizing a true tree) within which the input distance matrices must all lie in order to satisfy a precise combinatorial condition under which the distance-based method is guaranteed to return a correct tree. A stochastic safety radius is a safety radius under which the distance-based method is guaranteed to return a correct tree within a certain probability. In this paper we investigated stochastic safety radii for the neighbor-joining (NJ) method and balanced minimal evolution (BME) method for .
Cite
@article{arxiv.1507.08734,
title = {Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees},
author = {Jing Xi and Jin Xie and Ruriko Yoshida and Stefan Forcey},
journal= {arXiv preprint arXiv:1507.08734},
year = {2015}
}
Comments
6 figures. 12 pages