English

Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees

Populations and Evolution 2015-08-03 v1 Combinatorics

Abstract

A distance-based method to reconstruct a phylogenetic tree with nn leaves takes a distance matrix, n×nn \times n symmetric matrix with 00s in the diagonal, as its input and reconstructs a tree with nn leaves using tools in combinatorics. A safety radius is a radius from a tree metric (a distance matrix realizing a true tree) within which the input distance matrices must all lie in order to satisfy a precise combinatorial condition under which the distance-based method is guaranteed to return a correct tree. A stochastic safety radius is a safety radius under which the distance-based method is guaranteed to return a correct tree within a certain probability. In this paper we investigated stochastic safety radii for the neighbor-joining (NJ) method and balanced minimal evolution (BME) method for n=5n = 5.

Cite

@article{arxiv.1507.08734,
  title  = {Stochastic safety radius on Neighbor-Joining method and Balanced Minimal Evolution on small trees},
  author = {Jing Xi and Jin Xie and Ruriko Yoshida and Stefan Forcey},
  journal= {arXiv preprint arXiv:1507.08734},
  year   = {2015}
}

Comments

6 figures. 12 pages

R2 v1 2026-06-22T10:23:01.903Z