English

SpikeProphecy: A Large-Scale Benchmark for Autoregressive Neural Population Forecasting

Neurons and Cognition 2026-05-14 v1 Machine Learning

Abstract

Neural population models, which predict the joint firing of many simultaneously recorded neurons forward in time, are typically evaluated by a single aggregate Pearson correlation rr between predicted and actual spike counts, a number that masks critical structure. We argue that how we evaluate spike forecasting matters as much as what we build, and introduce SpikeProphecy, the first large-scale benchmark for causal, autoregressive spike-count forecasting on real electrophysiology recordings. Our core contribution is a population metric decomposition that separates aggregate performance into temporal fidelity, spatial pattern accuracy, and magnitude-invariant alignment. The decomposition surfaces aspects of the underlying data that an aggregate scalar collapses together. We apply the protocol to 105 Neuropixels sessions (Steinmetz 2019 + IBL Repeated Site; ~89,800 neurons) with seven architecture baselines spanning four structural families: four SSMs (three diagonal and one non-diagonal), a Transformer, an LSTM, and a spiking network. The decomposition surfaces a brain-region predictability ranking that reproduces across all seven baselines and survives ANCOVA correction for firing-statistics constraints (region ΔR2=0.018\Delta R^2 = 0.018 above the firing-statistics covariates). It also exposes a sub-Poisson evaluation floor where rigorous metrics combine with genuine biophysical constraints on regular spike trains, and yields a negative result on KL-on-output-rates distillation for ANN-to-SNN transfer in this Poisson count domain.

Keywords

Cite

@article{arxiv.2605.12992,
  title  = {SpikeProphecy: A Large-Scale Benchmark for Autoregressive Neural Population Forecasting},
  author = {John R. Minnick and Jinghui Geng and Kamran Hussain and Jesus Gonzalez-Ferrer and Ash Robbins and Mohammed A. Mostajo-Radji and David Haussler and Jason K. Eshraghian and Mircea Teodorescu},
  journal= {arXiv preprint arXiv:2605.12992},
  year   = {2026}
}

Comments

26 pages, 4 figures, 12 tables; submitted to NeurIPS 2026 Datasets and Benchmarks Track; processed dataset at https://huggingface.co/datasets/mysteriousauthor/spikeprophecy-steinmetz (CC-BY-4.0); code at https://github.com/JohnMinnick/SpikeProphecy-A-Large-Scale-Benchmark-for-Autoregressive-Neural-Population-Forecasting

R2 v1 2026-07-22T07:09:15.419Z