Simulated single molecule microscopy with SMeagol
Abstract
SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation, and optimization of advanced analysis methods for live cell single molecule microscopy data. Availability and Implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction-diffusion simulations. Documentation, source code, and binaries for recent versions of Mac OS, Windows, and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net.
Keywords
Cite
@article{arxiv.1509.04031,
title = {Simulated single molecule microscopy with SMeagol},
author = {Martin Lindén and Vladimir Ćurić and Alexis Boucharin and David Fange and Johan Elf},
journal= {arXiv preprint arXiv:1509.04031},
year = {2017}
}
Comments
v2: 14 pages including supplementary text. Pre-copyedited, author-produced version of an application note published in Bioinformatics following peer review. The version of record, and additional supplementary material is available online at: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btw109