English

Representing Semantified Biological Assays in the Open Research Knowledge Graph

Digital Libraries 2020-09-17 v1

Abstract

In the biotechnology and biomedical domains, recent text mining efforts advocate for machine-interpretable, and preferably, semantified, documentation formats of laboratory processes. This includes wet-lab protocols, (in)organic materials synthesis reactions, genetic manipulations and procedures for faster computer-mediated analysis and predictions. Herein, we present our work on the representation of semantified bioassays in the Open Research Knowledge Graph (ORKG). In particular, we describe a semantification system work-in-progress to generate, automatically and quickly, the critical semantified bioassay data mass needed to foster a consistent user audience to adopt the ORKG for recording their bioassays and facilitate the organisation of research, according to FAIR principles.

Keywords

Cite

@article{arxiv.2009.07642,
  title  = {Representing Semantified Biological Assays in the Open Research Knowledge Graph},
  author = {Marco Anteghini and Jennifer D'Souza and Vitor A. P. Martins dos Santos and Sören Auer},
  journal= {arXiv preprint arXiv:2009.07642},
  year   = {2020}
}

Comments

In Proceedings of 'The 22nd International Conference on Asia-Pacific Digital Libraries'

R2 v1 2026-06-23T18:35:02.155Z