A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.
@article{arxiv.1606.00042,
title = {ReconMap: An interactive visualisation of human metabolism},
author = {Alberto Noronha and Anna Dröfn Danielsdóttir and Freyr Jóhannsson and Soffia Jónsdóttir and Sindri Jarlsson and Jón Pétur Gunnarsson and Sigurður Brynjólfsson and Piotr Gawron and Reinhard Schneider and Ines Thiele and Ronan M. T. Fleming},
journal= {arXiv preprint arXiv:1606.00042},
year = {2016}
}