English

Orchard Networks are Trees with Additional Horizontal Arcs

Combinatorics 2021-10-22 v1

Abstract

Phylogenetic networks are used in biology to represent evolutionary histories. The class of orchard phylogenetic networks was recently introduced for their computational benefits, without any biological justification. Here, we show that orchard networks can be interpreted as trees with additional \emph{horizontal} arcs. Therefore, they are closely related to tree-based networks, where the difference is that in tree-based networks the additional arcs do not need to be horizontal. Then, we use this new characterization to show that the space of orchard networks is connected under the rNNI rearrangement move, with a diameter of at most 4kn+nlog2(n)+2k+6n84kn+n\lceil \log_2(n) \rceil +2k+6n-8.

Keywords

Cite

@article{arxiv.2110.11065,
  title  = {Orchard Networks are Trees with Additional Horizontal Arcs},
  author = {Leo van Iersel and Remie Janssen and Mark Jones and Yukihiro Murakami},
  journal= {arXiv preprint arXiv:2110.11065},
  year   = {2021}
}

Comments

14 pages, 11 figures

R2 v1 2026-06-24T07:04:15.943Z