English

New constructions of DNA codes under multiple constraints and parallel searching algorithms

Information Theory 2024-09-11 v1 math.IT

Abstract

DNA codes have garnered significant interest due to their utilization in digital media storage, cryptography, and DNA computing. In this paper, we first extend the results of constructing reversible group codes \cite{Cengellenmis} and reversible composite group codes \cite{Korban5} to general even-order finite groups. By using these results, we give parallel searching algorithms to find some new DNA codes with better parameters. Secondly, by mapping codes over F4\mathbb{F}_4 to DNA codes, we establish a relationship between the GCGC-weight enumerator of DNA codes and the Hamming weight enumerator of their trace codes, which greatly improves the computational efficiency of searching for DNA codes. Based on this relationship, we propose an efficient algorithm for generating DNA codes with 50%50\% GCGC-content. Furthermore, we find that there is no direct connection between the GCGC-weight enumerator of a DNA code and the GCGC-weight enumerator of its dual code. Finally, we present algorithms for determining whether a DNA code is free from secondary structures or conflict-free, and some new DNA codes with better parameters under multiple constraints are obtained, which are listed in Tables 1 and 4.

Keywords

Cite

@article{arxiv.2409.06519,
  title  = {New constructions of DNA codes under multiple constraints and parallel searching algorithms},
  author = {Guodong Wang and Hongwei Liu and Xueyan Chen},
  journal= {arXiv preprint arXiv:2409.06519},
  year   = {2024}
}
R2 v1 2026-06-28T18:39:56.329Z