Ising model description of long range correlations in DNA sequences
Other Quantitative Biology
2015-05-13 v4 Statistical Mechanics
Abstract
We model long range correlations of nucleotides in the human DNA sequence using the long range one dimensional Ising model. We show that for distances between and bp the correlations show an universal behaviour and may be described by the non-mean field limit of the long range 1d Ising model. This allows us to make some testable hypothesis on the nature of the interaction between distant portions of the DNA chain which led to the DNA structure that we observe today in higher eukaryotes.
Keywords
Cite
@article{arxiv.1409.0356,
title = {Ising model description of long range correlations in DNA sequences},
author = {A. Colliva and R. Pellegrini and A. Testori and M. Caselle},
journal= {arXiv preprint arXiv:1409.0356},
year = {2015}
}
Comments
15 pages, 6 figures. Substantial changes in sect. 4.2. Some clarifications and comments added throughout the paper. Journal version