English

Interaction of proteins in solution from small angle scattering: a perturbative approach

Statistical Mechanics 2009-11-07 v2 q-bio

Abstract

In this work, an improved methodology for studying interactions of proteins in solution by small-angle scattering, is presented. Unlike the most common approach, where the protein-protein correlation functions gij(r)g_{ij}(r) are approximated by their zero-density limit (i.e. the Boltzmann factor), we propose a more accurate representation of gij(r)g_{ij}(r) which takes into account terms up to the first order in the density expansion of the mean-force potential. This improvement is expected to be particulary effective in the case of strong protein-protein interactions at intermediate concentrations. The method is applied to analyse small angle X-ray scattering data obtained as a function of the ionic strength (from 7 to 507 mM) from acidic solutions of β\beta -Lactoglobuline at the fixed concentration of 10 gL1\rm g L^{-1}. The results are compared with those obtained using the zero-density approximation and show a significant improvement particularly in the more demanding case of low ionic strength.

Keywords

Cite

@article{arxiv.cond-mat/0201370,
  title  = {Interaction of proteins in solution from small angle scattering: a perturbative approach},
  author = {Francesco Spinozzi and Domenico Gazzillo and Achille Giacometti and Paolo Mariani and Flavio Carsughi},
  journal= {arXiv preprint arXiv:cond-mat/0201370},
  year   = {2009}
}

Comments

12 pages, 3 figures, to appear in Biophysical Journal (April 2002) Due to an unfortunate name mismatch, the original submission contained an incorrect source

R2 v1 2026-07-22T10:33:26.808Z